Wall clock time and date at job start Mon Mar 30 2020 00:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99590 * 2 1 4 4 N 1.46509 * 109.46974 * 125.00121 * 3 2 1 5 5 C 1.46497 * 119.99867 * 262.22438 * 4 3 2 6 6 C 1.50701 * 109.47152 * 269.99726 * 5 4 3 7 7 H 1.07998 * 119.99894 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00022 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99972 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47344 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47461 * 119.99628 * 10 8 6 13 13 H 1.48501 * 109.46983 * 239.99450 * 10 8 6 14 14 C 1.34771 * 119.99424 * 82.22126 * 4 3 2 15 15 O 1.21623 * 119.99477 * 182.39710 * 14 4 3 16 16 C 1.47252 * 120.00402 * 2.39919 * 14 4 3 17 17 N 1.30563 * 125.54285 * 171.65176 * 16 14 4 18 18 C 1.30700 * 115.90846 * 180.02562 * 17 16 14 19 19 C 1.50694 * 122.11023 * 179.97438 * 18 17 16 20 20 C 1.34235 * 115.78067 * 0.25066 * 18 17 16 21 21 S 1.71073 * 109.09448 * 359.62755 * 20 18 17 22 22 H 1.08003 * 119.99388 * 179.97438 * 1 2 3 23 23 H 1.08004 * 120.00613 * 359.97438 * 1 2 3 24 24 H 1.07989 * 120.00403 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47287 * 5.01041 * 3 2 1 26 26 H 1.08992 * 109.47422 * 245.00237 * 3 2 1 27 27 H 1.09001 * 109.47536 * 30.00015 * 5 4 3 28 28 H 1.09000 * 109.46639 * 150.00118 * 5 4 3 29 29 H 0.97003 * 120.00074 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46868 * 90.02358 * 19 18 17 31 31 H 1.08997 * 109.47464 * 210.02417 * 19 18 17 32 32 H 1.09004 * 109.47282 * 330.02831 * 19 18 17 33 33 H 1.07999 * 125.45242 * 179.75236 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6196 2.0167 2.3713 6 6 3.0581 3.4568 2.3019 7 1 3.5645 3.8253 1.4220 8 6 2.8129 4.3041 3.3617 9 7 2.1957 3.8555 4.4329 10 14 3.3558 6.0893 3.2753 11 1 4.0228 6.3414 1.9727 12 1 2.1703 6.9741 3.4042 13 1 4.3066 6.3715 4.3806 14 6 4.1937 0.7266 1.0316 15 8 4.9482 0.7112 1.9854 16 6 4.5913 0.0839 -0.2322 17 7 5.7759 -0.3951 -0.5002 18 6 5.9222 -0.9267 -1.6853 19 6 7.2302 -1.5204 -2.1409 20 6 4.8355 -0.9052 -2.4730 21 16 3.5464 -0.1630 -1.6281 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5401 0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3584 2.1317 0.0898 26 1 2.6212 1.4028 -0.9313 27 1 1.5380 1.9721 2.4990 28 1 3.1056 1.5293 3.2165 29 1 2.0228 4.4517 5.1784 30 1 7.2611 -2.5774 -1.8764 31 1 7.3208 -1.4136 -3.2218 32 1 8.0548 -0.9998 -1.6540 33 1 4.7829 -1.2959 -3.4785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324090896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:12 Heat of formation + Delta-G solvation = 17.303450 kcal Electronic energy + Delta-G solvation = -17792.175419 eV Core-core repulsion = 14945.027417 eV Total energy + Delta-G solvation = -2847.148002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31206 -40.29868 -37.45072 -35.23531 -33.80921 -32.93886 -30.08531 -28.77451 -27.49794 -26.82304 -24.45042 -21.74947 -20.76303 -20.35054 -19.08089 -18.65829 -17.88336 -17.38994 -16.67526 -16.44616 -16.08602 -15.54519 -15.33127 -14.55406 -14.37053 -14.27369 -14.16448 -13.63331 -13.43661 -13.27666 -13.18674 -12.97210 -12.64484 -12.33067 -12.24884 -11.87618 -11.64901 -11.36651 -10.78330 -10.66203 -10.65158 -10.30591 -9.67721 -9.54613 -8.24727 -6.39234 -0.75699 0.16067 0.75018 1.22600 1.35079 1.37861 1.40802 1.51819 1.94949 2.23494 2.38852 3.05643 3.21708 3.69334 3.89315 4.07498 4.20171 4.21802 4.31503 4.70330 4.75325 4.79472 4.85861 4.93377 5.02067 5.16643 5.31044 5.40480 5.66046 5.70722 5.82462 6.00370 6.34706 6.67466 6.71764 7.08687 7.32186 8.83185 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.006110 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.233775 B = 4581.793980 C = 5321.354176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.209 4.209 3 C 0.120 3.880 4 N -0.582 5.582 5 C 0.265 3.735 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.265 1.265 13 H -0.283 1.283 14 C 0.574 3.426 15 O -0.568 6.568 16 C -0.054 4.054 17 N -0.442 5.442 18 C 0.023 3.977 19 C -0.077 4.077 20 C -0.290 4.290 21 S 0.301 5.699 22 H 0.125 0.875 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.040 0.960 28 H 0.003 0.997 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -9.780 -19.050 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.229 4.229 3 C -0.003 4.003 4 N -0.313 5.313 5 C 0.145 3.855 6 C -0.587 4.587 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.190 1.190 13 H -0.209 1.209 14 C 0.359 3.641 15 O -0.447 6.447 16 C -0.327 4.327 17 N -0.161 5.161 18 C -0.114 4.114 19 C -0.136 4.136 20 C -0.430 4.430 21 S 0.557 5.443 22 H 0.143 0.857 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.959 -9.446 -18.187 20.706 hybrid contribution 1.393 0.529 0.445 1.555 sum -1.567 -8.917 -17.742 19.918 Atomic orbital electron populations 1.24159 0.94602 1.03822 0.94772 1.23199 0.97413 0.97139 1.05157 1.21221 0.92838 0.98759 0.87504 1.48053 1.14561 1.51664 1.17019 1.18917 0.95475 0.90691 0.80451 1.21694 1.38741 0.95453 1.02769 0.92865 1.25795 0.94785 1.03572 0.94467 1.70045 1.42104 1.37624 1.06543 0.85379 0.78379 0.79008 0.78114 1.19343 1.18953 1.20906 1.17323 0.82201 0.78848 0.85731 1.90754 1.52949 1.61173 1.39840 1.27082 0.94652 1.10244 1.00764 1.66444 1.20763 1.09110 1.19778 1.20826 1.00134 1.02245 0.88160 1.20492 0.89894 1.00607 1.02615 1.27733 0.99252 1.07405 1.08561 1.84168 1.10669 1.46472 1.02942 0.85653 0.87135 0.87001 0.87043 0.89347 0.94168 0.97925 0.92226 0.89784 0.87658 0.92038 0.76233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.21 -5.24 7.94 25.65 0.20 -5.04 16 3 C 0.12 3.78 5.43 85.63 0.47 4.24 16 4 N -0.58 -25.97 2.46 -834.58 -2.06 -28.03 16 5 C 0.26 14.35 5.14 85.63 0.44 14.79 16 6 C -0.55 -31.65 9.39 25.60 0.24 -31.41 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.77 5.46 84.65 0.46 1.23 16 9 N -0.92 -55.27 13.29 21.45 0.28 -54.99 16 10 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 C 0.57 27.62 7.59 86.61 0.66 28.27 16 15 O -0.57 -33.48 16.64 -4.10 -0.07 -33.55 16 16 C -0.05 -2.08 7.23 87.25 0.63 -1.45 16 17 N -0.44 -16.96 10.57 -178.25 -1.88 -18.85 16 18 C 0.02 0.64 6.68 41.81 0.28 0.92 16 19 C -0.08 -1.50 10.28 71.23 0.73 -0.77 16 20 C -0.29 -5.85 10.82 66.91 0.72 -5.13 16 21 S 0.30 7.04 15.79 -56.49 -0.89 6.15 16 22 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 23 H 0.11 2.04 7.84 -2.91 -0.02 2.02 16 24 H 0.11 2.78 6.92 -2.92 -0.02 2.76 16 25 H 0.11 3.40 7.67 -2.38 -0.02 3.38 16 26 H 0.09 2.44 4.49 -21.07 -0.09 2.34 16 27 H 0.04 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.00 0.17 7.39 -2.39 -0.02 0.15 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.23 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -79.12 298.90 4.24 -74.88 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.03 Total: 3.55 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.81 Total: 3.95 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.66 Total: -101.87 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.07 Total: -33.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -0.89 Total: 6.15 kcal Total: -79.12 4.24 -74.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324090896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.184 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds