Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35347 * 117.00114 * 2 1 4 4 C 1.36154 * 125.56790 * 179.97438 * 3 2 1 5 5 C 1.39835 * 107.18610 * 179.97438 * 4 3 2 6 6 C 1.37952 * 106.67600 * 359.97438 * 5 4 3 7 7 C 1.41618 * 126.04220 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99992 * 359.97438 * 7 6 5 9 9 O 1.34979 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.42894 * 117.00134 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.47261 * 329.99383 * 10 9 7 12 12 C 1.50693 * 109.47235 * 209.99997 * 10 9 7 13 13 H 1.08005 * 120.00162 * 359.97438 * 12 10 9 14 14 C 1.37876 * 120.00507 * 179.97438 * 12 10 9 15 15 N 1.31522 * 119.99530 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00473 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47078 * 90.00203 * 16 14 12 18 18 H 1.48497 * 109.47238 * 210.00232 * 16 14 12 19 19 H 1.48502 * 109.47076 * 329.99762 * 16 14 12 20 20 C 1.52994 * 109.47398 * 89.99479 * 10 9 7 21 21 C 1.53000 * 117.49877 * 8.74815 * 20 10 9 22 22 C 1.52997 * 117.50135 * 300.08940 * 20 10 9 23 23 O 1.33993 * 125.57068 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47436 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47606 * 300.00010 * 1 2 3 26 26 H 1.09006 * 109.47226 * 60.00289 * 1 2 3 27 27 H 1.07992 * 126.40968 * 0.23850 * 4 3 2 28 28 H 1.08002 * 126.66050 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99946 * 180.02562 * 15 14 12 30 30 H 1.09009 * 115.55196 * 154.41666 * 20 10 9 31 31 H 1.08999 * 117.50011 * 359.97438 * 21 20 10 32 32 H 1.09008 * 117.49940 * 145.01580 * 21 20 10 33 33 H 1.08998 * 117.50069 * 214.97776 * 22 20 10 34 34 H 1.09000 * 117.49757 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 6 3.3898 1.4088 0.0005 5 6 3.5993 2.7913 -0.0003 6 6 2.3521 3.3808 -0.0019 7 6 2.0880 4.7721 -0.0026 8 8 3.0100 5.5665 -0.0013 9 8 0.8137 5.2172 -0.0036 10 6 0.6211 6.6331 -0.0048 11 1 1.4538 7.1136 0.5092 12 6 -0.6661 6.9656 0.7046 13 1 -1.2764 6.1747 1.1151 14 6 -1.0649 8.2795 0.8298 15 7 -0.3215 9.2427 0.3305 16 14 -2.6609 8.6916 1.7086 17 1 -2.3914 8.8954 3.1546 18 1 -3.2368 9.9332 1.1326 19 1 -3.6233 7.5737 1.5371 20 6 0.5533 7.1374 -1.4477 21 6 0.4881 6.0889 -2.5601 22 6 1.7720 6.8927 -2.3397 23 8 1.4262 2.3952 -0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.1531 0.6448 -0.0027 28 1 4.5526 3.2990 0.0002 29 1 -0.6018 10.1671 0.4188 30 1 -0.0013 8.0640 -1.5963 31 1 0.4940 5.0399 -2.2640 32 1 -0.1090 6.3259 -3.4407 33 1 2.0191 7.6581 -3.0753 34 1 2.6224 6.3728 -1.8984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -76.407652 kcal Electronic energy + Delta-G solvation = -20329.979666 eV Core-core repulsion = 17003.722424 eV Total energy + Delta-G solvation = -3326.257242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.77018 -39.83340 -38.64491 -36.59133 -34.84115 -33.20515 -32.80757 -30.02659 -28.09926 -27.21114 -23.90792 -22.80716 -22.01142 -21.44713 -20.47532 -19.20171 -18.76676 -17.55920 -17.17957 -16.71893 -16.01075 -15.63804 -15.41606 -14.90637 -14.55039 -13.83036 -13.42586 -13.28200 -12.99256 -12.86765 -12.45104 -12.33338 -11.73513 -11.65492 -11.46394 -11.12920 -10.96442 -10.58769 -10.34957 -10.09998 -10.05255 -10.04875 -9.48925 -9.13111 -8.53148 -8.44738 -8.14480 -6.19330 -4.26527 1.01178 2.20613 2.30922 3.04908 3.24251 3.29945 3.33591 3.43278 3.72920 4.33629 4.74684 4.86162 4.93485 4.94671 5.13375 5.18336 5.38068 5.46791 5.65421 5.80445 5.85925 6.08537 6.13870 6.22688 6.46802 6.52162 6.67100 6.81932 7.01148 7.03165 7.17514 7.52115 7.57388 7.78914 8.08951 8.52860 8.84754 9.37874 10.87975 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.005640 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.162699 B = 4963.650768 C = 5590.266313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.264 6.264 3 C 0.216 3.784 4 C -0.244 4.244 5 C -0.078 4.078 6 C -0.073 4.073 7 C 0.538 3.462 8 O -0.495 6.495 9 O -0.335 6.335 10 C 0.243 3.757 11 H 0.054 0.946 12 C -0.518 4.518 13 H 0.070 0.930 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.910 3.090 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.117 4.117 21 C -0.195 4.195 22 C -0.210 4.210 23 O -0.171 6.171 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.266 0.734 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -14.979 -1.929 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.119 3.881 4 C -0.264 4.264 5 C -0.097 4.097 6 C -0.121 4.121 7 C 0.384 3.616 8 O -0.387 6.387 9 O -0.251 6.251 10 C 0.189 3.811 11 H 0.071 0.929 12 C -0.556 4.556 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.736 3.264 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.135 4.135 21 C -0.232 4.232 22 C -0.247 4.247 23 O -0.070 6.070 24 H 0.128 0.872 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.146 -14.624 -1.951 15.085 hybrid contribution -0.963 0.397 0.285 1.080 sum 2.183 -14.227 -1.666 14.490 Atomic orbital electron populations 1.23207 0.76356 1.04784 1.03311 1.86368 1.23406 1.18905 1.89072 1.20902 0.89642 0.78583 0.98991 1.20740 0.92001 0.96728 1.16954 1.22045 0.97598 0.92567 0.97517 1.20078 0.86780 0.86205 1.19084 1.17955 0.83769 0.85579 0.74300 1.90896 1.45943 1.54613 1.47294 1.86279 1.25643 1.31737 1.81412 1.19828 0.98598 0.70689 0.91945 0.92868 1.20936 1.05643 0.92769 1.36211 0.91213 1.24899 0.97768 0.95641 0.95488 1.69983 1.37719 1.00083 1.44369 0.86305 0.82510 0.77955 0.79580 1.20366 1.20928 1.19609 1.23057 0.98555 1.00096 0.91837 1.22799 1.01328 0.97624 1.01479 1.23158 0.93037 1.03590 1.04898 1.84129 1.37234 1.13824 1.71862 0.87234 0.91455 0.91492 0.81793 0.81200 0.92378 0.85209 0.89966 0.90356 0.90391 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.74 101.05 1.08 1.24 16 2 O -0.26 -3.06 10.55 -40.97 -0.43 -3.49 16 3 C 0.22 2.99 7.86 29.98 0.24 3.23 16 4 C -0.24 -3.07 10.89 -39.73 -0.43 -3.50 16 5 C -0.08 -1.13 10.58 -39.09 -0.41 -1.54 16 6 C -0.07 -1.32 7.00 -38.40 -0.27 -1.59 16 7 C 0.54 11.75 6.63 32.02 0.21 11.96 16 8 O -0.49 -11.50 13.85 -19.42 -0.27 -11.77 16 9 O -0.34 -8.17 8.26 -44.02 -0.36 -8.53 16 10 C 0.24 6.48 2.37 -27.89 -0.07 6.41 16 11 H 0.05 1.57 7.11 -51.92 -0.37 1.20 16 12 C -0.52 -14.46 8.88 -34.44 -0.31 -14.77 16 13 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 14 C 0.06 1.77 5.20 -17.82 -0.09 1.67 16 15 N -0.88 -24.85 11.59 55.43 0.64 -24.21 16 16 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.12 -2.92 5.27 -90.62 -0.48 -3.40 16 21 C -0.20 -4.21 9.79 -26.70 -0.26 -4.48 16 22 C -0.21 -4.64 9.84 -26.70 -0.26 -4.90 16 23 O -0.17 -2.88 10.14 -22.42 -0.23 -3.11 16 24 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.13 3.50 6.47 -51.92 -0.34 3.17 16 31 H 0.08 1.77 6.92 -51.93 -0.36 1.41 16 32 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 2.11 5.33 -51.93 -0.28 1.84 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -30.51 299.09 -6.06 -36.57 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.85 Total: 3.78 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.05 Total: -9.66 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.64 Total: -24.21 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.29 Total: -26.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.51 -6.06 -36.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.838 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds