Wall clock time and date at job start Mon Mar 30 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47190 * 2 1 4 4 C 1.50706 * 109.46829 * 240.00309 * 2 1 3 5 5 H 1.07997 * 119.99914 * 275.01923 * 4 2 1 6 6 C 1.37877 * 119.99823 * 95.02062 * 4 2 1 7 7 N 1.31508 * 120.00047 * 184.89700 * 6 4 2 8 8 Si 1.86801 * 119.99968 * 4.89176 * 6 4 2 9 9 H 1.48497 * 109.46936 * 84.80484 * 8 6 4 10 10 H 1.48504 * 109.46853 * 204.80008 * 8 6 4 11 11 H 1.48490 * 109.47371 * 324.80253 * 8 6 4 12 12 N 1.46495 * 109.47256 * 120.00365 * 2 1 3 13 13 C 1.46499 * 120.00029 * 60.00067 * 12 2 1 14 14 C 1.34774 * 120.00311 * 240.00251 * 12 2 1 15 15 O 1.21723 * 119.99736 * 359.97438 * 14 12 2 16 16 C 1.46241 * 120.00453 * 180.02562 * 14 12 2 17 17 C 1.35246 * 120.00600 * 179.97438 * 16 14 12 18 18 C 1.46393 * 120.00661 * 179.97438 * 17 16 14 19 19 N 1.30825 * 125.55453 * 179.97438 * 18 17 16 20 20 C 1.30807 * 115.81587 * 179.97438 * 19 18 17 21 21 C 1.34167 * 115.80852 * 0.02562 * 20 19 18 22 22 S 1.71068 * 109.15212 * 359.74738 * 21 20 19 23 23 H 1.09000 * 109.47341 * 174.83741 * 1 2 3 24 24 H 1.09005 * 109.46722 * 294.83600 * 1 2 3 25 25 H 1.09004 * 109.47206 * 54.83689 * 1 2 3 26 26 H 0.97002 * 120.00546 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47769 * 89.99836 * 13 12 2 28 28 H 1.09006 * 109.47276 * 210.00276 * 13 12 2 29 29 H 1.08999 * 109.47305 * 329.99612 * 13 12 2 30 30 H 1.08000 * 119.99803 * 359.97438 * 16 14 12 31 31 H 1.08001 * 119.99341 * 0.02562 * 17 16 14 32 32 H 1.08005 * 122.09760 * 180.02562 * 20 19 18 33 33 H 1.08000 * 125.42679 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1351 -1.7854 -1.2293 6 6 2.3606 0.0123 -2.3580 7 7 2.7065 -0.6128 -3.4621 8 14 2.3138 1.8792 -2.3172 9 1 3.5989 2.3949 -1.7808 10 1 2.1072 2.3993 -3.6927 11 1 1.1982 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0876 1.1295 1.8906 16 6 3.2812 -0.7254 3.2770 17 6 4.0591 -0.0684 4.1671 18 6 4.5472 -0.7585 5.3624 19 7 5.3032 -0.2304 6.2903 20 6 5.6281 -1.0223 7.2794 21 6 5.1434 -2.2715 7.2110 22 16 4.2065 -2.4328 5.7887 23 1 -0.3634 -1.0235 -0.0925 24 1 -0.3633 0.4317 0.9327 25 1 -0.3634 0.5919 -0.8402 26 1 2.9372 -0.1045 -4.2554 27 1 2.4157 -2.7378 0.9715 28 1 1.6238 -2.2854 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 3.0203 -1.7594 3.4479 31 1 4.3196 0.9658 3.9965 32 1 6.2478 -0.6914 8.0998 33 1 5.3134 -3.0499 7.9401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348621297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:38 Heat of formation + Delta-G solvation = 32.765407 kcal Electronic energy + Delta-G solvation = -17310.457783 eV Core-core repulsion = 14463.980262 eV Total energy + Delta-G solvation = -2846.477521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78332 -39.23290 -35.61046 -33.92608 -32.66059 -30.64175 -29.65496 -26.39769 -25.97982 -25.23224 -23.09400 -20.45700 -20.13157 -18.42936 -17.78306 -17.35708 -16.51372 -15.66754 -15.54128 -14.82349 -14.57968 -14.17691 -13.79364 -13.62585 -13.09318 -12.67408 -12.43780 -12.34981 -12.31708 -11.76921 -11.55845 -11.37248 -11.06903 -10.69179 -10.60390 -10.45124 -10.00479 -9.80933 -9.69354 -9.37829 -9.16739 -8.61845 -8.51341 -7.70865 -6.18081 -4.20649 -0.03191 1.05763 1.50930 1.60943 2.79829 3.31309 3.38927 3.46139 3.58303 3.80141 4.14807 4.38213 4.83966 4.87694 4.99278 5.14492 5.20746 5.36792 5.60925 5.78588 5.95133 6.03742 6.17580 6.26526 6.32775 6.38457 6.56086 6.90587 7.04901 7.41891 7.45328 7.60510 8.08361 8.45403 8.81406 8.85303 9.44300 10.93758 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.004325 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.213664 B = 6472.838683 C = 6752.806232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.221 3.779 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.579 5.579 13 C 0.082 3.918 14 C 0.534 3.466 15 O -0.552 6.552 16 C -0.157 4.157 17 C -0.020 4.020 18 C 0.076 3.924 19 N -0.450 5.450 20 C 0.036 3.964 21 C -0.290 4.290 22 S 0.161 5.839 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.056 0.944 26 H 0.267 0.733 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -5.656 19.127 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.701 3.299 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.309 5.309 13 C -0.062 4.062 14 C 0.322 3.678 15 O -0.433 6.433 16 C -0.184 4.184 17 C -0.043 4.043 18 C -0.195 4.195 19 N -0.164 5.164 20 C -0.120 4.120 21 C -0.430 4.430 22 S 0.417 5.583 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.176 0.824 32 H 0.191 0.809 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.652 -5.324 18.334 19.103 hybrid contribution 0.706 0.888 0.765 1.368 sum 1.359 -4.436 19.100 19.655 Atomic orbital electron populations 1.22226 0.98182 1.00934 0.99279 1.19374 0.90892 0.95020 0.82621 0.91612 1.21106 1.44839 0.95724 0.94726 0.90363 1.24958 0.93684 0.98550 0.95204 1.69882 1.45040 1.36127 1.01709 0.86898 0.80000 0.86023 0.76990 1.19534 1.21366 1.18777 1.48267 1.48199 1.11728 1.22688 1.21680 1.01930 0.82991 0.99600 1.17982 0.79916 0.86631 0.83274 1.90783 1.58625 1.16824 1.77100 1.23388 0.99194 1.00304 0.95516 1.21412 0.94347 1.00408 0.88124 1.26334 1.00628 0.93599 0.98951 1.67032 1.12390 1.35061 1.01927 1.21735 1.02395 0.89381 0.98512 1.26560 1.08042 1.03206 1.05214 1.83913 1.45453 1.13661 1.15251 0.93047 0.95366 0.92466 0.92345 0.92480 0.92623 0.90712 0.85425 0.82432 0.80911 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.04 37.16 0.34 -2.70 16 2 C 0.22 5.25 2.30 -69.08 -0.16 5.09 16 3 H 0.07 1.72 4.05 -51.93 -0.21 1.51 16 4 C -0.53 -14.26 8.82 -34.44 -0.30 -14.57 16 5 H 0.08 2.24 7.67 -52.49 -0.40 1.84 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 8 Si 0.87 22.06 26.99 -169.99 -4.59 17.47 16 9 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.39 6.82 56.52 0.39 -6.01 16 12 N -0.58 -11.77 2.75 -176.97 -0.49 -12.26 16 13 C 0.08 1.27 9.25 59.85 0.55 1.82 16 14 C 0.53 10.70 7.60 -13.05 -0.10 10.61 16 15 O -0.55 -13.16 15.56 5.17 0.08 -13.08 16 16 C -0.16 -2.35 8.77 -37.43 -0.33 -2.68 16 17 C -0.02 -0.28 9.74 -37.37 -0.36 -0.65 16 18 C 0.08 0.99 7.41 -14.70 -0.11 0.88 16 19 N -0.45 -6.02 10.67 -11.70 -0.12 -6.14 16 20 C 0.04 0.37 11.24 -19.42 -0.22 0.15 16 21 C -0.29 -2.51 11.08 29.30 0.32 -2.18 16 22 S 0.16 1.56 22.05 -107.50 -2.37 -0.81 16 23 H 0.05 0.97 6.88 -51.93 -0.36 0.61 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.65 6.09 -51.93 -0.32 0.33 16 29 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 30 H 0.13 1.53 5.30 -52.49 -0.28 1.25 16 31 H 0.16 2.45 7.52 -52.49 -0.39 2.06 16 32 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -32.89 296.64 -6.27 -39.17 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.56 Total: -0.97 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.46 Total: -2.05 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.16 Total: -44.19 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.59 Total: 17.47 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.37 Total: -0.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.89 -6.27 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348621297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.931 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds