Wall clock time and date at job start Mon Mar 30 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47190 * 2 1 4 4 C 1.50706 * 109.46829 * 240.00309 * 2 1 3 5 5 H 1.07997 * 119.99914 * 275.01923 * 4 2 1 6 6 C 1.37877 * 119.99823 * 95.02062 * 4 2 1 7 7 N 1.31508 * 120.00047 * 184.89700 * 6 4 2 8 8 Si 1.86801 * 119.99968 * 4.89176 * 6 4 2 9 9 H 1.48497 * 109.46936 * 84.80484 * 8 6 4 10 10 H 1.48504 * 109.46853 * 204.80008 * 8 6 4 11 11 H 1.48490 * 109.47371 * 324.80253 * 8 6 4 12 12 N 1.46495 * 109.47256 * 120.00365 * 2 1 3 13 13 C 1.46499 * 120.00029 * 60.00067 * 12 2 1 14 14 C 1.34774 * 120.00311 * 240.00251 * 12 2 1 15 15 O 1.21723 * 119.99736 * 359.97438 * 14 12 2 16 16 C 1.46241 * 120.00453 * 180.02562 * 14 12 2 17 17 C 1.35246 * 120.00600 * 179.97438 * 16 14 12 18 18 C 1.46393 * 120.00661 * 179.97438 * 17 16 14 19 19 N 1.30825 * 125.55453 * 179.97438 * 18 17 16 20 20 C 1.30807 * 115.81587 * 179.97438 * 19 18 17 21 21 C 1.34167 * 115.80852 * 0.02562 * 20 19 18 22 22 S 1.71068 * 109.15212 * 359.74738 * 21 20 19 23 23 H 1.09000 * 109.47341 * 174.83741 * 1 2 3 24 24 H 1.09005 * 109.46722 * 294.83600 * 1 2 3 25 25 H 1.09004 * 109.47206 * 54.83689 * 1 2 3 26 26 H 0.97002 * 120.00546 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47769 * 89.99836 * 13 12 2 28 28 H 1.09006 * 109.47276 * 210.00276 * 13 12 2 29 29 H 1.08999 * 109.47305 * 329.99612 * 13 12 2 30 30 H 1.08000 * 119.99803 * 359.97438 * 16 14 12 31 31 H 1.08001 * 119.99341 * 0.02562 * 17 16 14 32 32 H 1.08005 * 122.09760 * 180.02562 * 20 19 18 33 33 H 1.08000 * 125.42679 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1351 -1.7854 -1.2293 6 6 2.3606 0.0123 -2.3580 7 7 2.7065 -0.6128 -3.4621 8 14 2.3138 1.8792 -2.3172 9 1 3.5989 2.3949 -1.7808 10 1 2.1072 2.3993 -3.6927 11 1 1.1982 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0876 1.1295 1.8906 16 6 3.2812 -0.7254 3.2770 17 6 4.0591 -0.0684 4.1671 18 6 4.5472 -0.7585 5.3624 19 7 5.3032 -0.2304 6.2903 20 6 5.6281 -1.0223 7.2794 21 6 5.1434 -2.2715 7.2110 22 16 4.2065 -2.4328 5.7887 23 1 -0.3634 -1.0235 -0.0925 24 1 -0.3633 0.4317 0.9327 25 1 -0.3634 0.5919 -0.8402 26 1 2.9372 -0.1045 -4.2554 27 1 2.4157 -2.7378 0.9715 28 1 1.6238 -2.2854 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 3.0203 -1.7594 3.4479 31 1 4.3196 0.9658 3.9965 32 1 6.2478 -0.6914 8.0998 33 1 5.3134 -3.0499 7.9401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348621297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:38 Heat of formation + Delta-G solvation = 10.042057 kcal Electronic energy + Delta-G solvation = -17311.443141 eV Core-core repulsion = 14463.980262 eV Total energy + Delta-G solvation = -2847.462879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91054 -40.51081 -37.28245 -35.15929 -34.60798 -32.29389 -30.65203 -27.74921 -27.28908 -26.96021 -24.32640 -21.95626 -21.04736 -19.82874 -19.22736 -18.79586 -18.00593 -17.25252 -16.54291 -16.33792 -15.90883 -15.51903 -15.06543 -14.79313 -14.57794 -14.25812 -14.12827 -13.94339 -13.50126 -13.21023 -13.03488 -12.80321 -12.52384 -12.41916 -12.30334 -11.82715 -11.59287 -11.27451 -10.88172 -10.82777 -10.78351 -10.52440 -9.53020 -9.23743 -8.36750 -6.40254 -0.96856 0.24231 0.57162 0.74143 1.27654 1.34565 1.42382 1.87243 2.18495 2.28377 2.40566 3.00085 3.16074 3.79240 3.93729 4.15741 4.34457 4.42679 4.45429 4.50780 4.66847 4.76984 4.80892 4.87015 5.02577 5.03168 5.15137 5.20590 5.40690 5.54307 5.80496 6.16326 6.64217 6.65154 6.71877 7.22201 7.32620 8.78546 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.004325 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.213664 B = 6472.838683 C = 6752.806232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.040 0.960 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.923 3.077 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.250 1.250 12 N -0.588 5.588 13 C 0.076 3.924 14 C 0.527 3.473 15 O -0.603 6.603 16 C -0.168 4.168 17 C 0.003 3.997 18 C 0.026 3.974 19 N -0.475 5.475 20 C 0.012 3.988 21 C -0.266 4.266 22 S 0.218 5.782 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.197 0.803 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -7.313 22.110 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.117 3.883 3 H 0.058 0.942 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.748 3.252 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.174 1.174 12 N -0.317 5.317 13 C -0.066 4.066 14 C 0.318 3.682 15 O -0.488 6.488 16 C -0.194 4.194 17 C -0.021 4.021 18 C -0.243 4.243 19 N -0.190 5.190 20 C -0.143 4.143 21 C -0.407 4.407 22 S 0.474 5.526 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.179 0.821 31 H 0.152 0.848 32 H 0.214 0.786 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.167 -7.005 21.323 22.444 hybrid contribution 0.948 1.257 0.076 1.576 sum 1.115 -5.749 21.399 22.185 Atomic orbital electron populations 1.22080 0.95483 1.02100 1.00142 1.19180 0.92875 0.93534 0.82752 0.94233 1.21355 1.43528 0.94880 0.95957 0.92578 1.25595 0.94132 1.02016 0.95200 1.69977 1.47346 1.37480 1.02452 0.86118 0.79513 0.82050 0.77477 1.21262 1.20200 1.17364 1.48194 1.48344 1.13520 1.21651 1.21959 1.01890 0.80038 1.02723 1.18698 0.78957 0.86230 0.84350 1.90747 1.60386 1.19177 1.78484 1.23036 1.01041 1.01473 0.93870 1.21313 0.92707 0.99500 0.88555 1.26034 1.03124 0.96043 0.99128 1.66998 1.12411 1.36930 1.02659 1.22146 1.03521 0.89939 0.98729 1.27126 1.05350 1.03302 1.04873 1.83691 1.44072 1.10016 1.14807 0.91464 0.93228 0.93145 0.92260 0.92932 0.88067 0.90197 0.82065 0.84784 0.78581 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 9.04 71.98 0.65 -4.90 16 2 C 0.22 10.38 2.30 44.25 0.10 10.48 16 3 H 0.04 2.10 4.05 -2.39 -0.01 2.09 16 4 C -0.52 -28.60 8.82 25.60 0.23 -28.37 16 5 H 0.06 3.28 7.67 -2.91 -0.02 3.26 16 6 C 0.03 1.75 5.47 84.66 0.46 2.21 16 7 N -0.93 -57.03 13.96 21.45 0.30 -56.73 16 8 Si 0.92 46.51 26.99 68.60 1.85 48.36 16 9 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.25 -11.91 6.82 99.48 0.68 -11.23 16 12 N -0.59 -23.57 2.75 -832.03 -2.29 -25.86 16 13 C 0.08 2.20 9.25 127.77 1.18 3.38 16 14 C 0.53 21.19 7.60 86.32 0.66 21.84 16 15 O -0.60 -29.71 15.56 -4.42 -0.07 -29.78 16 16 C -0.17 -4.84 8.77 23.66 0.21 -4.64 16 17 C 0.00 0.07 9.74 23.70 0.23 0.30 16 18 C 0.03 0.63 7.41 86.97 0.64 1.28 16 19 N -0.47 -11.98 10.67 -190.92 -2.04 -14.02 16 20 C 0.01 0.21 11.24 83.92 0.94 1.15 16 21 C -0.27 -3.40 11.08 66.89 0.74 -2.66 16 22 S 0.22 3.40 22.05 -56.49 -1.25 2.16 16 23 H 0.07 2.42 6.88 -2.39 -0.02 2.41 16 24 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.99 6.09 -2.38 -0.01 1.98 16 29 H 0.08 2.23 6.53 -2.39 -0.02 2.22 16 30 H 0.16 3.37 5.30 -2.91 -0.02 3.35 16 31 H 0.13 4.40 7.52 -2.91 -0.02 4.37 16 32 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -74.60 296.64 3.66 -70.95 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.10 Total: 4.83 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.05 Total: 0.10 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.03 Total: -96.61 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.07 Total: -29.78 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.85 Total: 48.36 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.25 Total: 2.16 kcal Total: -74.60 3.66 -70.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348621297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.988 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds