Wall clock time and date at job start Mon Mar 30 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46641 * 2 1 4 4 C 1.50697 * 109.47035 * 240.00965 * 2 1 3 5 5 H 1.08009 * 119.99802 * 239.99475 * 4 2 1 6 6 C 1.37882 * 120.00581 * 59.99723 * 4 2 1 7 7 N 1.31517 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00247 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47104 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47258 * 119.99856 * 8 6 4 11 11 H 1.48507 * 109.46790 * 239.99814 * 8 6 4 12 12 N 1.46493 * 109.47456 * 120.00343 * 2 1 3 13 13 C 1.46499 * 119.99970 * 60.00133 * 12 2 1 14 14 C 1.34776 * 120.00227 * 240.00051 * 12 2 1 15 15 O 1.21719 * 119.99939 * 0.02562 * 14 12 2 16 16 C 1.46245 * 119.99963 * 179.97438 * 14 12 2 17 17 C 1.35246 * 119.99877 * 185.57507 * 16 14 12 18 18 C 1.46398 * 120.00029 * 7.22187 * 17 16 14 19 19 N 1.30835 * 125.55426 * 227.45770 * 18 17 16 20 20 C 1.30807 * 115.81486 * 180.02562 * 19 18 17 21 21 C 1.34174 * 115.80681 * 359.97438 * 20 19 18 22 22 S 1.71059 * 109.15058 * 359.73549 * 21 20 19 23 23 H 1.08997 * 109.47499 * 59.99495 * 1 2 3 24 24 H 1.09007 * 109.46990 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47287 * 299.99436 * 1 2 3 26 26 H 0.96996 * 120.00059 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47150 * 270.00113 * 13 12 2 28 28 H 1.09001 * 109.47383 * 30.00261 * 13 12 2 29 29 H 1.09002 * 109.47463 * 149.99788 * 13 12 2 30 30 H 1.08000 * 120.00220 * 5.30504 * 16 14 12 31 31 H 1.08003 * 120.00129 * 187.22369 * 17 16 14 32 32 H 1.08000 * 122.09653 * 180.02562 * 20 19 18 33 33 H 1.08001 * 125.42277 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2390 -2.4828 7 7 0.9426 0.8300 -2.6034 8 14 2.3213 -1.1199 -4.0082 9 1 3.1464 -2.2865 -3.6041 10 1 1.1661 -1.5861 -4.8163 11 1 3.1465 -0.1867 -4.8166 12 7 2.0183 -0.6906 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0868 1.1298 1.8910 16 6 3.2803 -0.7251 3.2775 17 6 3.9623 -0.0396 4.2231 18 6 4.0771 1.4170 4.1313 19 7 5.1820 2.1034 4.2723 20 6 5.0657 3.4008 4.1528 21 6 3.8288 3.8557 3.9009 22 16 2.7520 2.5300 3.8055 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.7079 1.1612 -3.4843 27 1 0.7377 -2.1445 1.9991 28 1 1.5296 -2.5969 0.4706 29 1 2.4630 -2.5820 1.9860 30 1 3.0916 -1.7806 3.4065 31 1 4.4223 -0.5667 5.0459 32 1 5.9124 4.0642 4.2499 33 1 3.5573 4.8932 3.7735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348621300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:46 Heat of formation + Delta-G solvation = 24.567127 kcal Electronic energy + Delta-G solvation = -17951.140467 eV Core-core repulsion = 15104.307442 eV Total energy + Delta-G solvation = -2846.833025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89167 -40.14192 -37.24905 -34.89784 -34.51558 -31.56310 -30.36889 -27.58683 -27.30459 -26.62406 -24.37592 -22.09118 -20.97081 -19.90520 -18.66684 -18.29530 -18.05236 -17.11333 -16.49567 -16.04663 -15.73435 -15.54216 -14.77480 -14.66901 -14.41076 -14.07663 -13.83101 -13.55826 -13.46847 -13.01063 -12.77017 -12.69424 -12.62789 -12.23727 -12.16562 -12.11490 -11.18677 -11.09257 -10.97667 -10.55333 -10.38042 -10.19072 -9.24623 -8.83211 -8.14698 -6.30600 -0.62137 0.47850 0.85465 1.03755 1.39464 1.41831 1.52462 1.99600 2.31090 2.49381 2.55602 3.13536 3.36059 3.84087 4.18903 4.35438 4.46210 4.62708 4.64389 4.77313 4.80449 4.92824 4.97979 5.06434 5.12852 5.16282 5.39191 5.50793 5.66260 5.69700 6.06852 6.18197 6.78047 6.81650 6.87056 7.32874 7.49821 8.89351 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.005609 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.105387 B = 4990.671510 C = 5293.537072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.011 0.989 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.590 5.590 13 C 0.074 3.926 14 C 0.502 3.498 15 O -0.583 6.583 16 C -0.173 4.173 17 C -0.004 4.004 18 C 0.036 3.964 19 N -0.481 5.481 20 C 0.004 3.996 21 C -0.313 4.313 22 S 0.239 5.761 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.187 0.813 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -3.502 14.636 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.199 4.199 17 C -0.026 4.026 18 C -0.235 4.235 19 N -0.196 5.196 20 C -0.153 4.153 21 C -0.455 4.455 22 S 0.499 5.501 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.206 0.794 31 H 0.211 0.789 32 H 0.204 0.796 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.062 -3.167 14.298 14.683 hybrid contribution 0.981 0.790 -1.354 1.849 sum 2.043 -2.377 12.944 13.318 Atomic orbital electron populations 1.21850 0.97118 1.00064 0.99890 1.18499 0.91538 0.92317 0.81595 0.97074 1.21632 1.31591 1.12964 0.91235 0.92162 1.25709 0.95155 0.95659 1.01968 1.70026 1.37433 1.23954 1.24263 0.85451 0.78218 0.78512 0.79098 1.18890 1.19918 1.21436 1.48216 1.48143 1.13407 1.22083 1.21961 1.01598 0.80508 1.02737 1.19334 0.79304 0.86612 0.85519 1.90869 1.60121 1.18234 1.77536 1.23628 1.00921 1.02861 0.92455 1.21917 0.94466 0.86882 0.99378 1.26482 0.91638 0.99942 1.05449 1.67014 1.27708 1.07060 1.17795 1.21838 0.98151 0.90832 1.04498 1.26904 0.99213 1.06677 1.12678 1.83676 1.13409 0.95872 1.57130 0.91660 0.93532 0.95954 0.92743 0.91297 0.91528 0.88511 0.79438 0.78924 0.79608 0.78932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.97 71.98 0.65 -5.52 16 2 C 0.26 13.37 2.64 44.24 0.12 13.49 16 3 H 0.01 0.69 6.90 -2.39 -0.02 0.67 16 4 C -0.54 -28.85 7.99 25.60 0.20 -28.64 16 5 H 0.06 3.16 7.33 -2.91 -0.02 3.14 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 8 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 N -0.59 -23.82 2.75 -832.04 -2.29 -26.11 16 13 C 0.07 2.14 9.18 127.77 1.17 3.31 16 14 C 0.50 19.60 7.27 86.32 0.63 20.23 16 15 O -0.58 -27.42 10.81 -4.41 -0.05 -27.47 16 16 C -0.17 -4.55 9.29 23.66 0.22 -4.33 16 17 C 0.00 -0.10 10.24 23.71 0.24 0.15 16 18 C 0.04 1.19 5.83 86.97 0.51 1.69 16 19 N -0.48 -16.58 10.67 -190.91 -2.04 -18.62 16 20 C 0.00 0.13 11.24 83.92 0.94 1.08 16 21 C -0.31 -9.41 11.08 66.89 0.74 -8.67 16 22 S 0.24 7.92 19.53 -56.49 -1.10 6.82 16 23 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 24 H 0.05 1.99 7.67 -2.38 -0.02 1.97 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 2.14 7.02 -2.39 -0.02 2.12 16 29 H 0.10 1.99 6.03 -2.39 -0.01 1.98 16 30 H 0.19 3.07 6.15 -2.91 -0.02 3.06 16 31 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.19 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -72.03 290.90 3.78 -68.25 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.12 Total: 10.55 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.87 Total: -5.98 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.08 Total: -97.31 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 7.92 SS G_CDS: -1.10 Total: 6.82 kcal Total: -72.03 3.78 -68.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348621300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.814 kcal (2) G-P(sol) polarization free energy of solvation -72.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds