Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00078 * 2 1 4 4 C 1.50695 * 109.47597 * 180.02562 * 3 2 1 5 5 C 1.33081 * 120.00306 * 183.58671 * 4 3 2 6 6 C 1.46949 * 120.00089 * 4.24219 * 5 4 3 7 7 O 1.21539 * 119.99914 * 354.06284 * 6 5 4 8 8 O 1.34793 * 120.00213 * 174.06397 * 6 5 4 9 9 C 1.45197 * 117.00259 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.46907 * 29.99908 * 9 8 6 11 11 C 1.50692 * 109.47219 * 269.99773 * 9 8 6 12 12 H 1.08007 * 119.99941 * 119.99615 * 11 9 8 13 13 C 1.37878 * 120.00379 * 300.00002 * 11 9 8 14 14 N 1.31516 * 119.99491 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00438 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47175 * 89.99845 * 15 13 11 17 17 H 1.48499 * 109.47019 * 210.00143 * 15 13 11 18 18 H 1.48501 * 109.46923 * 329.99507 * 15 13 11 19 19 C 1.50696 * 109.47353 * 149.99440 * 9 8 6 20 20 C 1.34513 * 125.79491 * 219.99948 * 19 9 8 21 21 C 1.41378 * 106.84361 * 180.02562 * 20 19 9 22 22 C 1.34511 * 106.84238 * 0.02562 * 21 20 19 23 23 O 1.34302 * 108.42046 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46863 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47425 * 299.99574 * 1 2 3 26 26 H 1.09002 * 109.47162 * 59.99995 * 1 2 3 27 27 H 1.09004 * 109.46492 * 59.99905 * 3 2 1 28 28 H 1.08999 * 109.47373 * 300.00497 * 3 2 1 29 29 H 1.08002 * 119.99992 * 3.58770 * 4 3 2 30 30 H 1.08003 * 119.99879 * 184.24529 * 5 4 3 31 31 H 0.97002 * 120.00054 * 179.97438 * 14 13 11 32 32 H 1.08005 * 126.57428 * 359.97438 * 20 19 9 33 33 H 1.08006 * 126.58043 * 180.02562 * 21 20 19 34 34 H 1.08006 * 125.79164 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2666 2.2807 0.0714 6 6 3.6369 3.5970 0.2453 7 8 2.4263 3.7002 0.2153 8 8 4.4019 4.6899 0.4381 9 6 3.7120 5.9568 0.6030 10 1 2.7380 5.7832 1.0606 11 6 3.5256 6.6063 -0.7439 12 1 2.5314 6.8236 -1.1058 13 6 4.6241 6.9232 -1.5146 14 7 5.8347 6.6590 -1.0738 15 14 4.3930 7.7276 -3.1845 16 1 4.3887 9.2041 -3.0264 17 1 5.5055 7.3293 -4.0840 18 1 3.1012 7.2887 -3.7708 19 6 4.5288 6.8622 1.4885 20 6 4.0431 7.6773 2.4420 21 6 5.1517 8.3370 3.0206 22 6 6.2484 7.8859 2.3858 23 8 5.8652 6.9927 1.4590 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.9771 0.2134 -0.0595 30 1 5.3415 2.2012 0.0019 31 1 6.6076 6.8815 -1.6160 32 1 3.0053 7.8042 2.7128 33 1 5.1233 9.0636 3.8191 34 1 7.2650 8.1899 2.5878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -107.106880 kcal Electronic energy + Delta-G solvation = -20100.803693 eV Core-core repulsion = 16773.215232 eV Total energy + Delta-G solvation = -3327.588461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.03360 -41.03520 -38.92683 -37.42781 -34.91462 -34.60060 -33.56353 -31.69033 -28.95358 -28.34171 -26.55312 -25.22670 -23.52332 -22.26626 -21.21558 -20.40045 -19.06995 -18.43194 -17.98520 -17.37100 -17.00804 -16.86237 -16.67263 -16.24811 -16.12943 -15.49720 -14.77804 -14.56905 -14.36928 -13.74527 -13.59580 -13.48240 -13.36052 -13.06538 -12.93574 -12.82018 -12.78520 -12.39838 -12.22127 -11.84834 -11.12326 -11.02828 -10.93599 -10.77700 -10.49575 -10.29015 -9.09110 -8.22673 -6.53220 0.25040 1.18034 1.36349 1.37879 1.47601 1.90837 2.13301 2.32016 2.33747 2.61380 2.73480 3.08352 3.92118 3.97551 4.30919 4.39625 4.40731 4.41969 4.47554 4.53437 4.57495 4.63199 4.71074 4.82361 5.09055 5.13105 5.19864 5.35020 5.43773 5.57432 5.79271 5.89998 5.98001 6.14194 6.50793 6.72664 7.11723 7.26200 8.75323 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.005999 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.964133 B = 4666.353143 C = 5548.606095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.086 3.914 4 C -0.039 4.039 5 C -0.195 4.195 6 C 0.471 3.529 7 O -0.552 6.552 8 O -0.348 6.348 9 C 0.278 3.722 10 H 0.060 0.940 11 C -0.578 4.578 12 H 0.060 0.940 13 C 0.041 3.959 14 N -0.844 5.844 15 Si 0.956 3.044 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.038 3.962 20 C -0.266 4.266 21 C -0.219 4.219 22 C -0.083 4.083 23 O -0.142 6.142 24 H 0.110 0.890 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.178 0.822 30 H 0.160 0.840 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -7.155 3.784 8.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C 0.011 3.989 4 C -0.057 4.057 5 C -0.214 4.214 6 C 0.320 3.680 7 O -0.448 6.448 8 O -0.263 6.263 9 C 0.226 3.774 10 H 0.077 0.923 11 C -0.614 4.614 12 H 0.078 0.922 13 C -0.168 4.168 14 N -0.477 5.477 15 Si 0.780 3.220 16 H -0.196 1.196 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.015 4.015 20 C -0.285 4.285 21 C -0.238 4.238 22 C -0.152 4.152 23 O -0.034 6.034 24 H 0.128 0.872 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.195 0.805 30 H 0.178 0.822 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.692 -7.384 3.568 8.374 hybrid contribution -0.524 1.208 -0.750 1.515 sum -2.215 -6.176 2.818 7.141 Atomic orbital electron populations 1.22924 0.79338 1.04123 1.00559 1.87754 1.21652 1.27836 1.95668 1.21724 0.91706 0.83857 1.01600 1.23794 0.93941 0.99160 0.88843 1.22158 1.02327 0.87834 1.09092 1.22244 0.85598 0.87157 0.73028 1.90671 1.16629 1.87763 1.49751 1.86799 1.42280 1.17147 1.80089 1.18606 0.87968 0.77233 0.93641 0.92268 1.21396 0.93720 1.43607 1.02632 0.92173 1.25810 0.94771 0.94581 1.01607 1.70153 0.98025 1.42002 1.37532 0.85595 0.78237 0.78908 0.79226 1.19601 1.19708 1.19627 1.22756 0.81550 1.01030 0.96163 1.21587 1.00964 1.04499 1.01457 1.21902 0.91357 1.05552 1.04993 1.24755 1.01542 0.96163 0.92706 1.84410 1.22807 1.49314 1.46898 0.87176 0.93775 0.93823 0.91608 0.91932 0.80477 0.82204 0.92170 0.83630 0.81211 0.75916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -11.18 10.69 -148.98 -1.59 -12.77 16 3 C 0.09 2.68 4.52 71.23 0.32 3.01 16 4 C -0.04 -1.10 9.98 24.53 0.24 -0.86 16 5 C -0.20 -6.64 10.15 23.40 0.24 -6.40 16 6 C 0.47 21.49 7.83 70.10 0.55 22.04 16 7 O -0.55 -26.45 12.37 19.71 0.24 -26.21 16 8 O -0.35 -18.27 9.28 -55.10 -0.51 -18.78 16 9 C 0.28 15.00 2.59 29.10 0.08 15.08 16 10 H 0.06 3.17 7.15 -2.38 -0.02 3.16 16 11 C -0.58 -32.86 8.91 25.60 0.23 -32.64 16 12 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 13 C 0.04 2.24 5.24 84.65 0.44 2.69 16 14 N -0.84 -47.13 10.45 21.45 0.22 -46.91 16 15 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 C 0.04 1.93 5.68 24.83 0.14 2.07 16 20 C -0.27 -11.70 10.80 22.19 0.24 -11.46 16 21 C -0.22 -8.19 10.91 22.19 0.24 -7.95 16 22 C -0.08 -3.26 12.09 66.97 0.81 -2.45 16 23 O -0.14 -7.10 8.62 -1.36 -0.01 -7.11 16 24 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.07 2.27 6.89 -2.38 -0.02 2.25 16 28 H 0.06 2.16 7.54 -2.39 -0.02 2.14 16 29 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.16 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.15 5.80 8.06 -2.91 -0.02 5.77 16 33 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.22 6.44 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -68.57 304.38 6.26 -62.31 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.10 Total: 19.37 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.78 Total: -15.07 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.22 Total: -46.91 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.87 Total: -64.87 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.57 6.26 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.797 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds