Wall clock time and date at job start Mon Mar 30 2020 00:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47393 * 285.83017 * 3 2 1 5 5 C 1.36938 * 119.99661 * 264.44697 * 4 3 2 6 6 H 1.08006 * 119.99809 * 196.57176 * 5 4 3 7 7 C 1.38808 * 120.00212 * 16.56483 * 5 4 3 8 8 N 1.31618 * 119.99919 * 22.45760 * 7 5 4 9 9 Si 1.86807 * 119.99932 * 202.45162 * 7 5 4 10 10 H 1.48498 * 109.46715 * 60.00395 * 9 7 5 11 11 H 1.48500 * 109.46768 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47213 * 300.00558 * 9 7 5 13 13 C 1.46496 * 120.00234 * 84.44039 * 4 3 2 14 14 C 1.50697 * 109.47189 * 270.00607 * 13 4 3 15 15 C 1.33639 * 126.04465 * 90.02393 * 14 13 4 16 16 N 1.31773 * 114.50449 * 180.02562 * 15 14 13 17 17 C 1.29022 * 117.12586 * 359.97438 * 16 15 14 18 18 C 1.50708 * 124.91872 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.47205 * 165.00156 * 18 17 16 20 20 C 1.52995 * 109.47329 * 285.00371 * 18 17 16 21 21 O 1.42903 * 109.46765 * 45.00404 * 18 17 16 22 22 S 1.70979 * 110.16739 * 0.02562 * 17 16 15 23 23 H 4.40637 * 5.51433 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.46848 * 165.82597 * 3 2 1 25 25 H 1.09007 * 109.47548 * 45.83257 * 3 2 1 26 26 H 0.97005 * 119.99892 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47520 * 150.00090 * 13 4 3 28 28 H 1.09006 * 109.46999 * 29.99945 * 13 4 3 29 29 H 1.08009 * 122.74491 * 359.97438 * 15 14 13 30 30 H 1.09005 * 109.46964 * 59.99575 * 20 18 17 31 31 H 1.08995 * 109.47450 * 179.97438 * 20 18 17 32 32 H 1.09004 * 109.47313 * 299.99778 * 20 18 17 33 33 H 0.96706 * 113.99640 * 299.99726 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3759 1.3288 5 6 3.4705 0.5942 2.2350 6 1 4.0716 0.3435 3.0966 7 6 3.0387 1.8999 2.0461 8 7 1.9850 2.1425 1.2958 9 14 3.9532 3.3126 2.8572 10 1 5.3605 3.3280 2.3834 11 1 3.2965 4.5962 2.5017 12 1 3.9292 3.1364 4.3314 13 6 3.2635 -1.7902 1.6882 14 6 1.9744 -2.2720 2.3024 15 6 0.9409 -2.8055 1.6443 16 7 -0.0756 -3.1489 2.4092 17 6 0.0430 -2.9354 3.6761 18 6 -1.0073 -3.2588 4.7074 19 1 -0.5612 -3.2301 5.7015 20 6 -2.1367 -2.2300 4.6253 21 8 -1.5329 -4.5642 4.4588 22 16 1.5636 -2.2311 4.0154 23 1 -1.0499 0.0001 0.0002 24 1 3.0088 0.9972 -0.2517 25 1 3.0097 -0.7152 -0.7372 26 1 1.6830 3.0549 1.1641 27 1 4.0751 -1.9103 2.4058 28 1 3.4801 -2.3741 0.7936 29 1 0.9387 -2.9430 0.5730 30 1 -2.5827 -2.2587 3.6311 31 1 -2.8965 -2.4642 5.3709 32 1 -1.7357 -1.2343 4.8149 33 1 -1.9462 -4.6628 3.5900 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352099035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:00 Heat of formation + Delta-G solvation = 74.783957 kcal Electronic energy + Delta-G solvation = -17955.427408 eV Core-core repulsion = 15110.771948 eV Total energy + Delta-G solvation = -2844.655460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.25668 -37.08246 -36.11918 -32.20213 -31.62189 -31.07624 -29.27278 -26.46075 -25.96161 -24.30431 -22.40325 -21.42348 -18.96506 -17.80924 -17.54553 -16.54214 -16.13340 -15.20688 -14.96311 -14.55770 -14.15256 -13.80279 -13.66831 -13.45512 -13.19398 -12.41032 -12.18457 -11.87103 -11.76437 -11.56132 -11.25936 -11.14633 -10.87144 -10.48203 -10.43425 -10.34626 -10.12763 -9.08457 -9.04899 -8.92088 -8.59580 -8.47789 -8.07026 -7.23004 -5.96577 -3.34167 1.34228 2.00655 2.46727 3.28585 3.35232 3.35611 3.46673 4.13580 4.33634 4.38140 4.43868 4.65048 5.08388 5.17981 5.18660 5.51236 5.55576 5.73403 5.82195 5.86568 5.90130 5.98004 6.18729 6.27133 6.53350 6.60194 6.84613 7.10091 7.35679 7.58772 7.63939 8.08120 8.32906 8.91581 9.15600 9.55998 10.01224 11.05199 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.006621 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.055219 B = 4228.155105 C = 4474.673921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.100 4.100 3 C 0.266 3.734 4 N -0.567 5.567 5 C -0.267 4.267 6 H 0.078 0.922 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.207 3.793 14 C -0.186 4.186 15 C 0.015 3.985 16 N -0.460 5.460 17 C -0.035 4.035 18 C 0.194 3.806 19 H 0.109 0.891 20 C -0.177 4.177 21 O -0.554 6.554 22 S 0.122 5.878 23 H 0.186 0.814 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.258 0.742 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.161 0.839 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -7.980 2.606 8.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.103 4.103 3 C 0.141 3.859 4 N -0.284 5.284 5 C -0.396 4.396 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.518 5.518 9 Si 0.733 3.267 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.078 3.922 14 C -0.312 4.312 15 C -0.136 4.136 16 N -0.176 5.176 17 C -0.313 4.313 18 C 0.132 3.868 19 H 0.127 0.873 20 C -0.236 4.236 21 O -0.359 6.359 22 S 0.375 5.625 23 H 0.203 0.797 24 H 0.117 0.883 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.178 0.822 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.962 -7.797 3.868 8.922 hybrid contribution -0.480 1.199 -0.997 1.632 sum -2.442 -6.598 2.871 7.598 Atomic orbital electron populations 1.24088 0.95226 1.06904 1.04615 1.24063 0.95089 0.94850 0.96294 1.17928 0.83024 0.99977 0.85000 1.44659 1.72723 0.99619 1.11380 1.19253 1.26273 0.87444 1.06676 0.90385 1.24995 0.96154 0.98507 0.99612 1.70149 1.20852 1.19773 1.41017 0.86341 0.79684 0.81530 0.79136 1.20689 1.21573 1.20774 1.19684 0.89507 0.85948 0.97097 1.27626 1.06259 1.03146 0.94140 1.21258 0.88707 1.03410 1.00240 1.65904 1.29604 1.19232 1.02833 1.27454 1.01247 1.06635 0.95968 1.20228 0.89281 0.83167 0.94131 0.87308 1.22456 0.98399 0.99600 1.03104 1.86486 1.78322 1.30549 1.40568 1.83759 1.12012 1.57190 1.09555 0.79669 0.88325 0.94189 0.93167 0.91775 0.91454 0.82191 0.91579 0.91312 0.91222 0.76846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.59 19.18 29.55 0.57 -6.02 16 2 C -0.10 -2.35 10.58 -37.13 -0.39 -2.74 16 3 C 0.27 5.94 5.45 -6.83 -0.04 5.90 16 4 N -0.57 -12.89 2.49 -177.95 -0.44 -13.33 16 5 C -0.27 -6.70 9.66 -15.06 -0.15 -6.84 16 6 H 0.08 1.93 7.90 -52.48 -0.41 1.51 16 7 C 0.01 0.22 4.85 -17.43 -0.08 0.13 16 8 N -0.88 -23.83 9.49 55.49 0.53 -23.30 16 9 Si 0.90 20.57 29.61 -169.99 -5.03 15.53 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.21 3.96 6.23 -5.20 -0.03 3.93 16 14 C -0.19 -3.63 5.90 -35.92 -0.21 -3.84 16 15 C 0.02 0.29 10.45 -19.19 -0.20 0.09 16 16 N -0.46 -8.66 10.37 -11.86 -0.12 -8.78 16 17 C -0.04 -0.62 6.28 -13.45 -0.08 -0.70 16 18 C 0.19 2.79 4.10 -27.88 -0.11 2.68 16 19 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 20 C -0.18 -2.31 9.52 37.16 0.35 -1.96 16 21 O -0.55 -7.88 13.33 -35.23 -0.47 -8.35 16 22 S 0.12 2.22 23.18 -107.50 -2.49 -0.28 16 23 H 0.19 3.75 7.80 -54.09 -0.42 3.33 16 24 H 0.10 2.41 6.42 -51.93 -0.33 2.07 16 25 H 0.04 0.77 7.97 -51.93 -0.41 0.35 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 27 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 28 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 29 H 0.16 2.96 8.06 -52.48 -0.42 2.54 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.38 4.76 8.90 45.56 0.41 5.16 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -29.06 305.88 -7.06 -36.12 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.26 Total: 7.15 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.38 Total: -9.38 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.04 Total: -45.41 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.47 Total: -8.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.49 Total: -0.28 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.06 -7.06 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352099035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.907 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds