Wall clock time and date at job start Mon Mar 30 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31745 * 123.76825 * 2 1 4 4 N 1.27569 * 118.27129 * 180.30925 * 3 2 1 5 5 S 1.56519 * 109.22483 * 359.72571 * 4 3 2 6 6 C 1.35343 * 123.76706 * 179.80941 * 2 1 3 7 7 C 1.50706 * 127.92030 * 0.02562 * 6 2 1 8 8 N 1.46893 * 109.47176 * 89.70634 * 7 6 2 9 9 C 1.46903 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47090 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47116 * 304.99858 * 10 9 8 12 12 C 1.47203 * 109.47027 * 64.99877 * 10 9 8 13 13 N 6.58929 * 106.20627 * 219.47469 * 2 1 3 14 14 C 1.52996 * 109.47118 * 184.99777 * 10 9 8 15 15 C 1.50703 * 109.47343 * 175.00132 * 14 10 9 16 16 H 1.07997 * 119.99829 * 0.02562 * 15 14 10 17 17 C 1.37874 * 120.00190 * 180.02562 * 15 14 10 18 18 N 1.31515 * 120.00148 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00154 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47431 * 89.99740 * 19 17 15 21 21 H 1.48492 * 109.47201 * 210.00404 * 19 17 15 22 22 H 1.48503 * 109.46831 * 329.99961 * 19 17 15 23 23 H 1.08997 * 109.47235 * 270.19203 * 1 2 3 24 24 H 1.08998 * 109.47162 * 30.19316 * 1 2 3 25 25 H 1.08996 * 109.47534 * 150.18890 * 1 2 3 26 26 H 1.09001 * 109.46953 * 209.70094 * 7 6 2 27 27 H 1.09000 * 109.47318 * 329.69692 * 7 6 2 28 28 H 1.00904 * 110.99720 * 303.94906 * 8 7 6 29 29 H 1.08993 * 109.46933 * 299.99334 * 9 8 7 30 30 H 1.09003 * 109.46864 * 60.00013 * 9 8 7 31 31 H 1.09003 * 109.47123 * 295.00294 * 14 10 9 32 32 H 1.09001 * 109.47187 * 55.00114 * 14 10 9 33 33 H 0.96994 * 120.00210 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2393 1.0952 0.0000 4 7 3.5091 0.9730 -0.0061 5 16 3.8806 -0.5475 -0.0052 6 6 2.2593 -1.1251 0.0037 7 6 1.7857 -2.5558 0.0080 8 7 1.6257 -3.0227 -1.3756 9 6 1.1647 -4.4171 -1.4106 10 6 1.0094 -4.8665 -2.8649 11 1 0.3483 -4.1769 -3.3897 12 6 2.3280 -4.8757 -3.5190 13 7 3.3460 -4.8842 -4.0226 14 6 0.4116 -6.2744 -2.9025 15 6 0.1446 -6.6687 -4.3323 16 1 0.3783 -5.9839 -5.1340 17 6 -0.3981 -7.9038 -4.6170 18 7 -0.6316 -8.2477 -5.8647 19 14 -0.8031 -9.0881 -3.2303 20 1 -2.1970 -8.8573 -2.7733 21 1 -0.6663 -10.4846 -3.7163 22 1 0.1323 -8.8640 -2.0989 23 1 -0.3633 0.0034 1.0276 24 1 -0.3633 0.8882 -0.5168 25 1 -0.3634 -0.8916 -0.5109 26 1 2.5189 -3.1797 0.5194 27 1 0.8291 -2.6204 0.5263 28 1 0.9995 -2.4215 -1.8899 29 1 1.8938 -5.0535 -0.9092 30 1 0.2037 -4.4949 -0.9020 31 1 1.1132 -6.9791 -2.4562 32 1 -0.5229 -6.2874 -2.3415 33 1 -1.0130 -9.1167 -6.0650 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309914106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:07 Heat of formation + Delta-G solvation = 59.999484 kcal Electronic energy + Delta-G solvation = -16905.798451 eV Core-core repulsion = 14092.794640 eV Total energy + Delta-G solvation = -2813.003812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90324 -38.86325 -36.95643 -35.49925 -34.44199 -33.15496 -30.30019 -28.42293 -27.70049 -25.37587 -23.68727 -23.21909 -21.23357 -19.62531 -18.89067 -18.52380 -16.97690 -16.53069 -16.41904 -16.00221 -15.51008 -15.18886 -14.82248 -14.49676 -14.24448 -13.94366 -13.82710 -13.70547 -13.47345 -13.25795 -13.06926 -13.00031 -12.74774 -12.31787 -12.16179 -12.02532 -11.62432 -11.58742 -11.24894 -11.05258 -10.69675 -10.63829 -10.51236 -9.35006 -8.21364 -6.27195 -0.76313 0.21410 0.75776 1.21524 1.45762 1.49626 1.59314 2.10740 2.17569 2.44557 3.10257 3.15604 3.24563 3.38451 3.75760 3.80007 4.15801 4.39169 4.46135 4.60975 4.72066 4.75826 4.77564 4.84177 4.86560 4.99858 5.24290 5.29446 5.51380 5.67460 5.96824 6.29151 6.43230 6.78652 6.81550 6.95880 7.37648 8.95775 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033708 B = 0.003772 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.453001 B = 7421.637606 C = 7730.218450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.019 3.981 3 N -0.275 5.275 4 N -0.336 5.336 5 S 0.463 5.537 6 C -0.247 4.247 7 C 0.144 3.856 8 N -0.706 5.706 9 C 0.077 3.923 10 C 0.023 3.977 11 H 0.116 0.884 12 C 0.261 3.739 13 N -0.520 5.520 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.026 0.974 17 C 0.000 4.000 18 N -0.957 5.957 19 Si 0.950 3.050 20 H -0.256 1.256 21 H -0.300 1.300 22 H -0.233 1.233 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.351 0.649 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 12.175 19.867 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 N -0.141 5.141 4 N -0.315 5.315 5 S 0.599 5.401 6 C -0.386 4.386 7 C 0.014 3.986 8 N -0.340 5.340 9 C -0.052 4.052 10 C 0.001 3.999 11 H 0.134 0.866 12 C -0.055 4.055 13 N -0.197 5.197 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.044 0.956 17 C -0.196 4.196 18 N -0.598 5.598 19 Si 0.773 3.227 20 H -0.181 1.181 21 H -0.227 1.227 22 H -0.156 1.156 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.701 13.027 18.941 23.285 hybrid contribution -2.562 -1.010 -0.208 2.762 sum 1.138 12.018 18.733 22.285 Atomic orbital electron populations 1.20452 0.82875 1.04924 1.04815 1.22753 1.01574 0.86279 1.02114 1.71223 0.97137 1.29536 1.16180 1.78645 1.10833 1.17480 1.24537 1.81429 1.09836 0.99416 1.49417 1.27192 0.98927 1.02673 1.09812 1.20272 1.02496 0.85393 0.90472 1.60434 1.56392 1.03768 1.13369 1.21996 1.02023 0.88498 0.92704 1.19112 0.84763 1.00550 0.95452 0.86622 1.29531 0.94457 0.90050 0.91468 1.81007 1.15202 1.11910 1.11621 1.19593 0.97852 0.91447 0.95319 1.21448 1.41103 1.01249 0.93143 0.95563 1.26086 0.95054 1.00328 0.98158 1.70102 1.46168 1.22403 1.21145 0.85665 0.80415 0.76768 0.79844 1.18054 1.22698 1.15573 0.88416 0.90209 0.88227 0.87986 0.89138 0.82931 0.89616 0.89113 0.95336 0.91450 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.02 71.24 0.71 -0.05 16 2 C 0.02 0.35 6.89 41.90 0.29 0.64 16 3 N -0.27 -6.84 11.68 -51.25 -0.60 -7.44 16 4 N -0.34 -8.53 12.54 37.02 0.46 -8.07 16 5 S 0.46 8.71 23.40 -56.49 -1.32 7.39 16 6 C -0.25 -3.99 6.18 25.02 0.15 -3.84 16 7 C 0.14 1.69 5.79 85.56 0.50 2.19 16 8 N -0.71 -11.68 6.19 -517.93 -3.21 -14.88 16 9 C 0.08 1.38 5.05 86.30 0.44 1.81 16 10 C 0.02 0.67 2.35 -12.60 -0.03 0.64 16 11 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 12 C 0.26 9.92 13.67 89.45 1.22 11.15 16 13 N -0.52 -22.81 18.54 20.00 0.37 -22.44 16 14 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 15 C -0.53 -27.49 9.15 25.60 0.23 -27.26 16 16 H 0.03 1.56 7.84 -2.91 -0.02 1.53 16 17 C 0.00 0.00 5.47 84.65 0.46 0.47 16 18 N -0.96 -58.28 13.96 21.45 0.30 -57.98 16 19 Si 0.95 39.62 27.47 68.60 1.88 41.51 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 21 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 23 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.69 7.68 -2.39 -0.02 0.67 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 0.60 7.78 -2.39 -0.02 0.58 16 28 H 0.35 5.31 8.72 -89.69 -0.78 4.53 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 32 H 0.07 2.08 7.57 -2.39 -0.02 2.06 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.78 306.54 2.27 -72.51 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.30 Total: 3.67 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.08 Total: -14.26 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -2.67 Total: -110.81 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.51 kcal Atomic # 16 Polarization: 8.71 SS G_CDS: -1.32 Total: 7.39 kcal Total: -74.78 2.27 -72.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309914106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.505 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds