Wall clock time and date at job start Mon Mar 30 2020 00:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47078 * 270.00420 * 3 2 1 5 5 H 1.48495 * 109.47161 * 30.00642 * 3 2 1 6 6 H 1.48503 * 109.46781 * 150.00713 * 3 2 1 7 7 C 1.37874 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.48243 * 110.99945 * 69.88084 * 11 10 9 13 13 C 1.51309 * 104.86433 * 267.45624 * 12 11 10 14 14 O 1.21274 * 125.75030 * 163.19958 * 13 12 11 15 15 N 1.34851 * 108.50002 * 343.17958 * 13 12 11 16 16 C 1.46504 * 125.20649 * 179.53424 * 15 13 12 17 17 C 1.53004 * 109.46730 * 90.02741 * 16 15 13 18 18 F 1.39893 * 109.47141 * 60.00222 * 17 16 15 19 19 F 1.39895 * 109.46989 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47007 * 300.00265 * 17 16 15 21 21 C 1.46809 * 109.58976 * 359.57585 * 15 13 12 22 22 H 0.97000 * 119.99677 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46642 * 60.00941 * 9 7 2 24 24 H 1.08993 * 109.47461 * 300.00825 * 9 7 2 25 25 H 1.09003 * 109.46588 * 60.00859 * 10 9 7 26 26 H 1.08992 * 109.47186 * 300.00318 * 10 9 7 27 27 H 1.09002 * 110.38139 * 148.57623 * 12 11 10 28 28 H 1.09002 * 110.38001 * 26.33313 * 12 11 10 29 29 H 1.09000 * 109.47238 * 210.02051 * 16 15 13 30 30 H 1.08993 * 109.47270 * 330.02718 * 16 15 13 31 31 H 1.08997 * 110.11653 * 136.76971 * 21 15 13 32 32 H 1.08998 * 110.11505 * 258.35993 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9342 -0.0012 12 6 0.8332 -5.1559 -1.3010 13 6 -0.5558 -4.5845 -1.1171 14 8 -1.3300 -4.3039 -2.0074 15 7 -0.7878 -4.4403 0.2034 16 6 -2.0193 -3.9072 0.7913 17 6 -3.0010 -5.0531 1.0447 18 9 -2.4248 -5.9747 1.9254 19 9 -4.1772 -4.5440 1.6055 20 9 -3.2989 -5.6881 -0.1658 21 6 0.3828 -4.8984 0.9618 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8717 -3.6044 0.8896 26 1 2.8719 -3.6044 -0.8904 27 1 0.7789 -6.2215 -1.5239 28 1 1.3582 -4.6285 -2.0975 29 1 -1.7871 -3.4125 1.7344 30 1 -2.4682 -3.1891 0.1052 31 1 0.6023 -4.2008 1.7700 32 1 0.2014 -5.8945 1.3657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488179606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:06 Heat of formation + Delta-G solvation = -187.742917 kcal Electronic energy + Delta-G solvation = -21547.090604 eV Core-core repulsion = 17706.441513 eV Total energy + Delta-G solvation = -3840.649091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.15456 -48.67809 -48.63754 -42.03116 -38.45602 -36.05441 -34.97499 -32.13519 -30.11173 -29.05295 -26.84429 -24.89226 -24.18186 -21.94077 -21.18149 -19.64801 -19.54478 -19.08212 -18.55298 -17.46806 -17.21117 -16.56089 -16.43989 -16.18271 -15.54711 -15.52989 -15.09372 -15.07034 -14.88522 -14.80827 -14.78071 -14.46049 -13.82976 -13.75086 -13.61696 -13.60205 -13.04042 -12.84290 -12.77981 -12.59368 -12.10350 -11.74395 -11.31355 -11.25176 -10.55111 -10.05876 -9.69714 -8.20908 -6.30911 1.25892 1.39020 1.40458 1.46742 1.50109 1.87698 2.39023 2.73255 2.82370 2.93093 3.13433 3.20513 3.38342 3.81254 4.09739 4.14381 4.26199 4.47138 4.56190 4.60515 4.76463 4.98175 5.04757 5.13031 5.46625 5.60308 5.66253 5.89144 5.96943 6.25324 6.85430 6.91017 7.38377 8.88836 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.006589 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.220322 B = 4248.630137 C = 4810.853982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.003 3.997 10 C 0.045 3.955 11 N -0.485 5.485 12 C 0.013 3.987 13 C 0.497 3.503 14 O -0.560 6.560 15 N -0.634 5.634 16 C 0.100 3.900 17 C 0.444 3.556 18 F -0.176 7.176 19 F -0.179 7.179 20 F -0.190 7.190 21 C 0.250 3.750 22 H 0.260 0.740 23 H -0.016 1.016 24 H 0.013 0.987 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -11.454 4.599 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.035 4.035 10 C -0.083 4.083 11 N -0.208 5.208 12 C -0.117 4.117 13 C 0.285 3.715 14 O -0.437 6.437 15 N -0.369 5.369 16 C -0.026 4.026 17 C 0.389 3.611 18 F -0.157 7.157 19 F -0.161 7.161 20 F -0.172 7.172 21 C 0.039 3.961 22 H 0.069 0.931 23 H 0.002 0.998 24 H 0.032 0.968 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.326 -11.633 4.313 12.478 hybrid contribution -0.781 1.823 -0.304 2.006 sum -2.107 -9.810 4.009 10.805 Atomic orbital electron populations 1.70066 1.07514 1.27426 1.51419 1.25830 0.95633 1.02890 0.94877 0.85586 0.78994 0.79219 0.78078 1.20643 1.21154 1.18453 1.21608 0.93629 0.92223 1.50545 0.91967 1.19663 0.94769 0.93681 0.95419 1.22631 0.96465 0.85978 1.03186 1.66021 1.18431 1.32674 1.03642 1.23207 0.89117 1.04906 0.94514 1.22152 0.90937 0.76144 0.82235 1.90686 1.54445 1.52392 1.46208 1.48702 1.16605 1.63596 1.08017 1.22316 0.83766 0.91953 1.04605 1.21167 0.81430 0.84753 0.73800 1.93173 1.84131 1.68980 1.69444 1.93185 1.50416 1.86963 1.85512 1.93197 1.93930 1.84091 1.45950 1.23472 0.77788 1.01714 0.93095 0.93100 0.99755 0.96845 0.89313 0.90743 0.83305 0.87619 0.83777 0.87603 0.88884 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -28.38 9.11 25.60 0.23 -28.15 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.00 0.13 3.61 29.85 0.11 0.24 16 10 C 0.05 1.57 5.31 86.30 0.46 2.02 16 11 N -0.49 -13.86 5.85 -903.62 -5.29 -19.15 16 12 C 0.01 0.39 6.49 85.49 0.55 0.94 16 13 C 0.50 18.41 5.94 87.84 0.52 18.93 16 14 O -0.56 -25.37 17.74 -3.01 -0.05 -25.42 16 15 N -0.63 -20.48 1.82 -828.65 -1.51 -21.98 16 16 C 0.10 3.00 6.01 86.38 0.52 3.52 16 17 C 0.44 12.24 3.29 71.98 0.24 12.48 16 18 F -0.18 -4.39 17.17 44.97 0.77 -3.62 16 19 F -0.18 -4.82 17.32 44.97 0.78 -4.04 16 20 F -0.19 -6.11 17.00 44.97 0.76 -5.35 16 21 C 0.25 6.71 6.44 170.13 1.10 7.80 16 22 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 23 H -0.02 -0.84 6.15 -2.39 -0.01 -0.85 16 24 H 0.01 0.63 5.96 -2.39 -0.01 0.62 16 25 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.07 2.56 7.83 -2.39 -0.02 2.55 16 27 H 0.15 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.11 3.21 7.61 -2.39 -0.02 3.19 16 29 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 30 H 0.11 3.71 8.02 -2.39 -0.02 3.69 16 31 H 0.09 2.55 6.68 -2.39 -0.02 2.53 16 32 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -65.56 283.56 3.12 -62.44 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.15 Total: 6.94 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 4.19 Total: 18.60 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -6.51 Total: -94.25 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 2.32 Total: -13.00 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.56 3.12 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488179606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.303 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds