Wall clock time and date at job start Mon Mar 30 2020 00:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48505 * 109.46948 * 269.99859 * 3 2 1 5 5 H 1.48505 * 109.47240 * 29.99672 * 3 2 1 6 6 H 1.48499 * 109.47292 * 149.99860 * 3 2 1 7 7 C 1.37873 * 120.00439 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84844 * 359.97438 * 7 2 1 9 9 C 1.53224 * 108.53996 * 231.32704 * 8 7 2 10 10 C 1.52966 * 109.40260 * 305.37252 * 9 8 7 11 11 H 1.08999 * 109.41393 * 303.55906 * 10 9 8 12 12 N 1.46502 * 109.41185 * 183.70199 * 10 9 8 13 13 C 1.39065 * 119.99811 * 155.00052 * 12 10 9 14 14 C 1.39129 * 119.69346 * 0.02562 * 13 12 10 15 15 C 1.38296 * 119.11112 * 179.97438 * 14 13 12 16 16 C 1.38967 * 118.49586 * 359.97438 * 15 14 13 17 17 Cl 1.73606 * 120.34951 * 179.97438 * 16 15 14 18 18 C 1.38125 * 119.30699 * 0.02562 * 16 15 14 19 19 N 1.31982 * 120.83463 * 359.97438 * 18 16 15 20 20 C 1.52964 * 109.81634 * 63.59885 * 10 9 8 21 21 C 1.51272 * 120.85107 * 179.97438 * 7 2 1 22 22 H 0.97001 * 120.00748 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.62579 * 111.61332 * 8 7 2 24 24 H 1.09003 * 109.78568 * 351.13987 * 8 7 2 25 25 H 1.08998 * 109.48575 * 185.39439 * 9 8 7 26 26 H 1.08998 * 109.48476 * 65.34708 * 9 8 7 27 27 H 0.96999 * 120.00089 * 335.00016 * 12 10 9 28 28 H 1.08004 * 120.43975 * 359.95338 * 14 13 12 29 29 H 1.07993 * 120.75324 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.58887 * 179.71991 * 18 16 15 31 31 H 1.08999 * 109.47990 * 56.38011 * 20 10 9 32 32 H 1.08993 * 109.48022 * 176.41918 * 20 10 9 33 33 H 1.09002 * 109.62292 * 248.38890 * 21 7 2 34 34 H 1.08993 * 109.62595 * 8.77030 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8238 -3.3820 1.1362 10 6 3.3407 -3.5064 0.9841 11 1 3.5741 -3.9110 -0.0008 12 7 3.8614 -4.4065 2.0161 13 6 5.0556 -5.0875 1.8067 14 6 5.7509 -4.9090 0.6149 15 6 6.9376 -5.5919 0.4194 16 6 7.3917 -6.4340 1.4273 17 17 8.8749 -7.3150 1.2325 18 6 6.6500 -6.5637 2.5853 19 7 5.5208 -5.8989 2.7435 20 6 3.9916 -2.1303 1.1342 21 6 3.5171 -1.2163 0.0000 22 1 -0.4851 0.8400 0.0004 23 1 1.4194 -3.0197 -0.9525 24 1 0.2030 -2.3436 0.1600 25 1 1.3715 -4.3727 1.0919 26 1 1.5915 -2.9187 2.0951 27 1 3.3732 -4.5273 2.8455 28 1 5.3689 -4.2463 -0.1476 29 1 7.4986 -5.4734 -0.4957 30 1 6.9963 -7.2204 3.3697 31 1 3.7078 -1.6966 2.0931 32 1 5.0756 -2.2340 1.0884 33 1 3.8772 -1.6005 -0.9545 34 1 3.8982 -0.2071 0.1557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:43 Heat of formation + Delta-G solvation = 14.805795 kcal Electronic energy + Delta-G solvation = -17645.664154 eV Core-core repulsion = 14796.364139 eV Total energy + Delta-G solvation = -2849.300015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22275 -37.67204 -36.47133 -34.35508 -32.42463 -31.81394 -29.97812 -29.15059 -26.91616 -23.83080 -22.93256 -21.59932 -21.40387 -19.55290 -17.66717 -16.89219 -16.18682 -16.00350 -14.73837 -14.55097 -14.43505 -14.28951 -13.38031 -13.12485 -12.97235 -12.64868 -12.46402 -12.15054 -12.09067 -11.66473 -11.20205 -11.14242 -10.98226 -10.77390 -10.32152 -10.12953 -9.89940 -9.79406 -9.48237 -9.45424 -9.07144 -8.76665 -8.55989 -7.44931 -6.19152 -4.11337 1.23836 1.33730 2.18432 3.21264 3.30068 3.30589 3.38610 3.86745 4.30407 4.62063 4.81800 5.02930 5.08456 5.18925 5.46977 5.69901 5.73770 5.92310 5.95385 6.02498 6.32544 6.38988 6.45859 6.59599 6.72889 6.73374 6.89107 6.99399 7.26239 7.28879 7.54987 7.59551 7.67938 7.81453 8.22153 8.27113 8.86357 9.44966 10.90163 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.004131 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.087410 B = 6776.418882 C = 7161.783062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.492 4.492 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.159 3.841 11 H 0.073 0.927 12 N -0.709 5.709 13 C 0.416 3.584 14 C -0.228 4.228 15 C -0.023 4.023 16 C -0.165 4.165 17 Cl -0.078 7.078 18 C 0.166 3.834 19 N -0.542 5.542 20 C -0.119 4.119 21 C -0.019 4.019 22 H 0.265 0.735 23 H 0.006 0.994 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.402 0.598 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 -10.179 2.295 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.511 4.511 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.056 3.944 11 H 0.091 0.909 12 N -0.336 5.336 13 C 0.178 3.822 14 C -0.253 4.253 15 C -0.049 4.049 16 C -0.197 4.197 17 Cl -0.050 7.050 18 C 0.007 3.993 19 N -0.260 5.260 20 C -0.158 4.158 21 C -0.057 4.057 22 H 0.075 0.925 23 H 0.024 0.976 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.237 0.763 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.175 0.825 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.093 -10.068 2.874 15.253 hybrid contribution 0.871 0.913 -0.394 1.322 sum 11.964 -9.154 2.481 15.267 Atomic orbital electron populations 1.69823 1.06175 1.27095 1.49459 1.24846 0.94714 0.98631 0.94360 0.86684 0.79991 0.83255 0.78569 1.20329 1.21590 1.18953 1.20012 0.89300 0.91460 1.50286 1.19337 0.98844 0.92724 0.91496 1.21928 0.91806 0.98879 1.02621 1.21196 0.95274 0.88632 0.89341 0.90883 1.45287 1.20716 1.45906 1.21707 1.18601 0.86942 0.87733 0.88939 1.21558 0.97532 1.06814 0.99417 1.21200 0.94374 0.91836 0.97538 1.21545 0.93313 1.05290 0.99576 1.98329 1.33847 1.75245 1.97607 1.22287 0.88269 0.94403 0.94370 1.67368 1.15162 1.11973 1.31499 1.22022 0.96975 0.95310 1.01501 1.19793 0.96751 0.95667 0.93490 0.92470 0.97559 0.92002 0.94374 0.92491 0.76304 0.83788 0.84350 0.82466 0.92577 0.94590 0.96402 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.73 55.43 0.71 -23.90 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.27 27.53 -169.99 -4.68 15.59 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.84 6.11 56.52 0.35 -5.50 16 7 C -0.49 -12.17 5.51 -98.92 -0.55 -12.71 16 8 C 0.01 0.32 5.96 -27.49 -0.16 0.16 16 9 C -0.11 -2.19 5.40 -26.63 -0.14 -2.34 16 10 C 0.16 2.77 2.04 -67.96 -0.14 2.64 16 11 H 0.07 1.27 6.45 -51.93 -0.34 0.94 16 12 N -0.71 -11.13 5.24 -53.95 -0.28 -11.41 16 13 C 0.42 6.41 7.63 -154.98 -1.18 5.23 16 14 C -0.23 -3.23 8.79 -39.23 -0.34 -3.57 16 15 C -0.02 -0.29 9.97 -39.29 -0.39 -0.68 16 16 C -0.16 -2.03 6.34 -39.35 -0.25 -2.28 16 17 Cl -0.08 -0.85 28.99 -51.86 -1.50 -2.35 16 18 C 0.17 2.13 10.97 -17.53 -0.19 1.94 16 19 N -0.54 -8.14 10.39 -12.40 -0.13 -8.27 16 20 C -0.12 -2.25 5.40 -26.65 -0.14 -2.40 16 21 C -0.02 -0.41 5.59 -27.50 -0.15 -0.56 16 22 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 24 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.40 6.01 8.72 -40.82 -0.36 5.66 16 28 H 0.14 2.02 6.10 -52.48 -0.32 1.70 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -26.40 290.03 -9.43 -35.83 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.17 Total: 2.80 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.75 Total: -12.65 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.29 Total: -43.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.68 Total: 15.59 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.40 -9.43 -35.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.634 kcal (2) G-P(sol) polarization free energy of solvation -26.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds