Wall clock time and date at job start Mon Mar 30 2020 00:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76197 * 100.00154 * 2 1 4 4 N 1.32496 * 119.17523 * 359.97438 * 3 2 1 5 5 C 1.32965 * 120.60557 * 180.02562 * 4 3 2 6 6 N 1.38514 * 120.48893 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00101 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99698 * 359.97438 * 7 6 5 9 9 C 1.38848 * 120.00074 * 179.97438 * 7 6 5 10 10 N 1.31541 * 119.99945 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99935 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46858 * 89.99992 * 11 9 7 13 13 H 1.48498 * 109.47047 * 209.99798 * 11 9 7 14 14 H 1.48493 * 109.47162 * 329.99863 * 11 9 7 15 15 C 1.39728 * 119.02085 * 359.74224 * 5 4 3 16 16 C 1.38163 * 118.49077 * 0.51516 * 15 5 4 17 17 C 1.50700 * 120.35507 * 179.76378 * 16 15 5 18 18 C 1.53941 * 113.73270 * 299.12638 * 17 16 15 19 19 N 1.47956 * 86.17846 * 138.07999 * 18 17 16 20 20 C 1.47959 * 90.76461 * 335.31049 * 19 18 17 21 21 N 1.32481 * 119.29453 * 359.48495 * 16 15 5 22 22 H 1.08998 * 109.47596 * 59.99919 * 1 2 3 23 23 H 1.09005 * 109.46786 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46854 * 299.99282 * 1 2 3 25 25 H 0.97005 * 119.99954 * 359.97438 * 6 5 4 26 26 H 0.97000 * 119.99901 * 179.97438 * 10 9 7 27 27 H 1.07999 * 120.75949 * 180.25274 * 15 5 4 28 28 H 1.09003 * 113.01106 * 167.49059 * 17 16 15 29 29 H 1.08996 * 113.75522 * 252.39701 * 18 17 16 30 30 H 1.08994 * 113.75615 * 23.76081 * 18 17 16 31 31 H 1.00902 * 110.99951 * 222.41913 * 19 18 17 32 32 H 1.09002 * 113.76114 * 270.37526 * 20 19 18 33 33 H 1.08997 * 113.75982 * 139.01277 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0889 2.5722 -0.0005 5 6 1.2870 3.8870 -0.0010 6 7 0.2115 4.7598 -0.0021 7 6 0.4271 6.1121 -0.0021 8 1 1.4358 6.4981 -0.0009 9 6 -0.6510 6.9870 -0.0037 10 7 -1.8795 6.5169 -0.0058 11 14 -0.3568 8.8318 -0.0030 12 1 -0.2767 9.3207 -1.4029 13 1 -1.4774 9.5114 0.6953 14 1 0.9173 9.1296 0.6991 15 6 2.5963 4.3752 0.0045 16 6 3.6381 3.4677 -0.0007 17 6 5.0665 3.9481 -0.0004 18 6 5.4335 4.8009 -1.2283 19 7 6.1582 5.6758 -0.2804 20 6 5.2907 5.2246 0.8300 21 7 3.3680 2.1707 -0.0002 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.6945 4.4131 -0.0029 26 1 -2.6327 7.1281 -0.0065 27 1 2.7895 5.4377 0.0083 28 1 5.7828 3.1546 0.2127 29 1 6.0832 4.2903 -1.9392 30 1 4.5769 5.2806 -1.7017 31 1 5.9978 6.6492 -0.4919 32 1 4.3923 5.8283 0.9586 33 1 5.8262 5.0527 1.7637 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:34 Heat of formation + Delta-G solvation = 77.082501 kcal Electronic energy + Delta-G solvation = -17695.715862 eV Core-core repulsion = 14883.452826 eV Total energy + Delta-G solvation = -2812.263036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20713 -38.64804 -35.87306 -32.87550 -31.98168 -29.67919 -28.59770 -27.04231 -25.86947 -25.40583 -23.45136 -21.86315 -19.51656 -18.47547 -17.56341 -16.67120 -15.81704 -15.66866 -14.97988 -14.48493 -14.38863 -14.21703 -13.71834 -13.66678 -13.49498 -12.97618 -12.44899 -12.42447 -11.88753 -11.78444 -11.63696 -11.15308 -10.97507 -10.85199 -10.76548 -10.63450 -10.31819 -9.53237 -9.40625 -9.16359 -8.86814 -8.28630 -7.83346 -7.11293 -6.87304 -4.13613 1.85781 1.89636 2.28605 2.63851 2.99176 2.99634 3.02871 3.78125 4.19996 4.38038 4.64068 4.75116 4.83727 5.14849 5.37196 5.46240 5.51812 5.54229 5.58097 5.85911 5.89637 5.93234 6.08159 6.13185 6.19187 6.21791 6.31161 6.68106 6.98956 7.18027 7.29281 7.51042 7.92088 8.45861 8.87026 9.00159 9.37460 10.28016 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.007739 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.881286 B = 3617.090124 C = 5642.174006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.042 6.042 3 C 0.345 3.655 4 N -0.608 5.608 5 C 0.386 3.614 6 N -0.509 5.509 7 C -0.308 4.308 8 H 0.105 0.895 9 C 0.030 3.970 10 N -0.875 5.875 11 Si 0.938 3.062 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.266 1.266 15 C -0.301 4.301 16 C 0.202 3.798 17 C -0.058 4.058 18 C 0.018 3.982 19 N -0.638 5.638 20 C 0.013 3.987 21 N -0.585 5.585 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.406 0.594 26 H 0.281 0.719 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.318 0.682 32 H 0.077 0.923 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 -3.253 -0.313 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.190 5.810 3 C -0.035 4.035 4 N -0.342 5.342 5 C 0.134 3.866 6 N -0.115 5.115 7 C -0.439 4.439 8 H 0.123 0.877 9 C -0.176 4.176 10 N -0.510 5.510 11 Si 0.763 3.237 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.190 1.190 15 C -0.335 4.335 16 C 0.061 3.939 17 C -0.078 4.078 18 C -0.113 4.113 19 N -0.262 5.262 20 C -0.118 4.118 21 N -0.313 5.313 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.242 0.758 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.150 -5.082 -0.182 8.774 hybrid contribution -2.160 3.267 -0.155 3.920 sum 4.989 -1.815 -0.336 5.320 Atomic orbital electron populations 1.23382 0.94706 1.05010 1.07144 1.85242 1.06382 0.96978 1.92438 1.23833 0.87109 0.98139 0.94466 1.68018 1.34422 1.02623 1.29116 1.18212 0.87704 0.86650 0.94053 1.40771 1.05670 1.04304 1.60776 1.19748 0.95155 0.79838 1.49193 0.87696 1.25422 0.94449 1.01609 0.96166 1.69679 0.98404 1.37101 1.45832 0.85732 0.78657 0.80444 0.78863 1.19821 1.20292 1.19014 1.21407 0.92152 1.00753 1.19138 1.20690 0.94153 0.88475 0.90629 1.21778 0.92502 0.96930 0.96609 1.23754 0.97342 0.94770 0.95423 1.66880 1.45955 1.08817 1.04552 1.23863 0.96416 0.95183 0.96311 1.68084 1.20184 1.15943 1.27090 0.89488 0.88723 0.89490 0.75823 0.90907 0.85406 0.87118 0.89314 0.90939 0.86931 0.90473 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.62 101.05 0.97 -0.94 16 2 S -0.04 -0.71 22.89 -107.50 -2.46 -3.17 16 3 C 0.35 7.32 7.85 -90.89 -0.71 6.61 16 4 N -0.61 -13.65 9.17 -12.65 -0.12 -13.77 16 5 C 0.39 8.97 7.67 -154.79 -1.19 7.78 16 6 N -0.51 -12.36 5.43 -10.99 -0.06 -12.42 16 7 C -0.31 -7.46 9.56 -15.05 -0.14 -7.60 16 8 H 0.11 2.40 5.73 -52.48 -0.30 2.10 16 9 C 0.03 0.72 5.50 -17.45 -0.10 0.63 16 10 N -0.87 -22.07 13.05 55.49 0.72 -21.34 16 11 Si 0.94 18.40 29.55 -169.99 -5.02 13.38 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 15 C -0.30 -6.34 8.02 -39.05 -0.31 -6.66 16 16 C 0.20 3.97 6.23 -82.34 -0.51 3.46 16 17 C -0.06 -0.93 4.36 -90.84 -0.40 -1.32 16 18 C 0.02 0.25 8.37 -2.77 -0.02 0.23 16 19 N -0.64 -8.43 8.53 -117.09 -1.00 -9.43 16 20 C 0.01 0.18 8.28 -2.77 -0.02 0.16 16 21 N -0.59 -12.39 10.33 -9.75 -0.10 -12.49 16 22 H 0.09 1.33 8.11 -51.92 -0.42 0.91 16 23 H 0.09 1.04 8.14 -51.91 -0.42 0.62 16 24 H 0.09 1.33 8.11 -51.91 -0.42 0.91 16 25 H 0.41 10.20 8.02 -40.82 -0.33 9.87 16 26 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.13 2.56 4.68 -52.49 -0.25 2.32 16 28 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 31 H 0.32 3.71 8.91 -39.29 -0.35 3.36 16 32 H 0.08 1.13 6.30 -51.93 -0.33 0.80 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -26.79 294.27 -9.66 -36.45 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -3.62 Total: 16.00 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.44 Total: 2.35 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.55 Total: -69.45 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.46 Total: -3.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.79 -9.66 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.535 kcal (2) G-P(sol) polarization free energy of solvation -26.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds