Wall clock time and date at job start Mon Mar 30 2020 00:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86805 * 120.00151 * 2 1 4 4 H 1.48503 * 109.46943 * 240.00435 * 3 2 1 5 5 H 1.48504 * 109.46686 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47334 * 119.99836 * 3 2 1 7 7 C 1.40027 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00462 * 165.51360 * 7 2 1 9 9 C 1.40856 * 119.99720 * 345.52145 * 7 2 1 10 10 C 1.41118 * 120.71941 * 332.87606 * 9 7 2 11 11 C 1.36876 * 118.40053 * 179.97438 * 10 9 7 12 12 C 1.38878 * 119.81129 * 0.25667 * 11 10 9 13 13 N 1.31736 * 121.51068 * 359.46597 * 12 11 10 14 14 C 1.32627 * 121.71047 * 0.54531 * 13 12 11 15 15 C 1.47724 * 119.99599 * 179.70966 * 14 13 12 16 16 C 1.41518 * 120.51846 * 136.42555 * 15 14 13 17 17 N 1.30907 * 120.08431 * 179.97438 * 16 15 14 18 18 C 1.34114 * 121.20017 * 0.02562 * 17 16 15 19 19 C 1.38800 * 132.22852 * 180.02562 * 18 17 16 20 20 C 1.38821 * 107.66647 * 179.97438 * 19 18 17 21 21 N 1.31330 * 108.97169 * 359.97438 * 20 19 18 22 22 N 1.37185 * 120.92569 * 359.97438 * 18 17 16 23 23 C 1.36223 * 119.96395 * 359.75069 * 22 18 17 24 24 H 0.96998 * 119.99879 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.80105 * 359.95776 * 10 9 7 26 26 H 1.08000 * 120.09687 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.24342 * 179.74052 * 12 11 10 28 28 H 1.08005 * 119.96013 * 359.95206 * 16 15 14 29 29 H 1.08000 * 126.17062 * 359.97438 * 19 18 17 30 30 H 1.08002 * 125.51395 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.57558 * 180.28101 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0958 1.6964 -1.2126 5 1 1.2771 2.7464 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0083 -1.2126 0.0005 8 1 3.0625 -1.2276 -0.2334 9 6 1.3375 -2.4130 0.3061 10 6 0.1938 -2.4094 1.1327 11 6 -0.4212 -3.6030 1.3983 12 6 0.0892 -4.7774 0.8607 13 7 1.1543 -4.7738 0.0854 14 6 1.7970 -3.6522 -0.2110 15 6 2.9915 -3.6928 -1.0792 16 6 3.1663 -2.7350 -2.1063 17 7 4.2283 -2.7787 -2.8704 18 6 5.1671 -3.7215 -2.7020 19 6 6.3594 -3.9796 -3.3641 20 6 6.9407 -5.0902 -2.7677 21 7 6.1657 -5.5056 -1.7922 22 7 5.0436 -4.6721 -1.7206 23 6 3.9582 -4.6631 -0.8975 24 1 -0.4850 0.8400 0.0004 25 1 -0.1869 -1.4872 1.5459 26 1 -1.2982 -3.6321 2.0279 27 1 -0.4008 -5.7145 1.0796 28 1 2.4224 -1.9673 -2.2602 29 1 6.7623 -3.4176 -4.1937 30 1 7.8789 -5.5394 -3.0583 31 1 3.8531 -5.4040 -0.1187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240418127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:46 Heat of formation + Delta-G solvation = 138.844101 kcal Electronic energy + Delta-G solvation = -18896.584817 eV Core-core repulsion = 15951.556013 eV Total energy + Delta-G solvation = -2945.028804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72207 -38.84445 -37.22162 -34.44576 -33.52960 -31.86778 -30.87299 -29.23556 -28.27568 -25.90033 -24.36054 -23.11866 -21.75283 -21.17549 -20.68103 -17.68388 -17.63127 -16.87520 -15.85985 -15.74499 -15.42205 -14.77364 -14.48634 -14.06354 -13.75881 -13.14068 -12.81401 -12.67389 -12.49076 -12.14129 -11.90150 -11.71005 -11.61693 -11.24823 -10.86959 -10.76424 -10.71051 -10.15735 -9.64708 -9.40382 -9.10528 -8.46991 -8.36100 -7.94264 -7.33503 -7.11698 -4.81600 1.06861 1.29627 2.35151 2.54880 2.71016 2.88372 2.91529 3.00452 3.04978 3.64863 3.97772 4.29363 4.40365 4.58037 4.97999 5.25311 5.29166 5.54861 5.75247 5.84371 6.03362 6.07720 6.17118 6.26770 6.48690 6.56357 6.68420 6.76593 6.78989 6.86148 7.01958 7.43992 7.51559 7.62719 7.84889 8.07640 8.16105 8.31725 8.37694 9.27629 9.72531 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.007437 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.076431 B = 3764.102959 C = 5110.238661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.443 4.443 8 H 0.087 0.913 9 C 0.092 3.908 10 C -0.123 4.123 11 C -0.144 4.144 12 C -0.024 4.024 13 N -0.451 5.451 14 C 0.008 3.992 15 C -0.063 4.063 16 C 0.216 3.784 17 N -0.483 5.483 18 C 0.257 3.743 19 C -0.289 4.289 20 C 0.077 3.923 21 N -0.332 5.332 22 N -0.300 5.300 23 C 0.136 3.864 24 H 0.290 0.710 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.191 0.809 29 H 0.154 0.846 30 H 0.190 0.810 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -0.894 -1.223 4.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.471 4.471 8 H 0.105 0.895 9 C 0.087 3.913 10 C -0.149 4.149 11 C -0.164 4.164 12 C -0.187 4.187 13 N -0.158 5.158 14 C -0.129 4.129 15 C -0.070 4.070 16 C 0.033 3.967 17 N -0.195 5.195 18 C 0.028 3.972 19 C -0.321 4.321 20 C -0.100 4.100 21 N -0.157 5.157 22 N -0.069 5.069 23 C 0.001 3.999 24 H 0.102 0.898 25 H 0.147 0.853 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.207 0.793 29 H 0.171 0.829 30 H 0.206 0.794 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.177 -1.920 -1.416 4.810 hybrid contribution -0.216 1.562 0.469 1.645 sum 3.961 -0.358 -0.947 4.088 Atomic orbital electron populations 1.69731 1.07746 1.30554 1.31799 1.26014 0.94860 1.01792 0.91764 0.86277 0.80292 0.79325 0.80791 1.18096 1.19826 1.18454 1.19592 0.97275 0.90531 1.39715 0.89506 1.18245 0.91805 0.92098 0.89122 1.21420 0.97599 0.97178 0.98654 1.21486 0.99766 0.94373 1.00797 1.21688 0.97114 0.96727 1.03156 1.66992 1.07255 1.30172 1.11389 1.18769 0.98466 0.90099 1.05608 1.19121 0.94548 0.95271 0.98024 1.23954 0.92335 0.94428 0.86018 1.68230 1.02553 1.20874 1.27800 1.20868 0.96821 0.88538 0.90977 1.20790 0.96611 1.05328 1.09343 1.23649 0.98844 0.94765 0.92699 1.77756 0.95889 1.16973 1.25097 1.47008 1.15598 1.21450 1.22842 1.22437 0.83141 1.00097 0.94197 0.89846 0.85304 0.87902 0.85745 0.79277 0.82872 0.79361 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.03 10.98 55.55 0.61 -16.42 16 2 C 0.08 1.65 5.21 -17.32 -0.09 1.56 16 3 Si 0.91 16.49 29.58 -169.99 -5.03 11.46 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -9.93 6.78 -37.92 -0.26 -10.19 16 8 H 0.09 1.92 6.40 -52.49 -0.34 1.59 16 9 C 0.09 2.13 5.56 -106.41 -0.59 1.54 16 10 C -0.12 -2.75 8.72 -38.98 -0.34 -3.09 16 11 C -0.14 -2.93 10.03 -39.84 -0.40 -3.33 16 12 C -0.02 -0.50 11.16 -17.36 -0.19 -0.69 16 13 N -0.45 -10.01 10.16 -9.18 -0.09 -10.10 16 14 C 0.01 0.19 6.45 -82.24 -0.53 -0.34 16 15 C -0.06 -1.30 5.25 -104.80 -0.55 -1.85 16 16 C 0.22 4.33 9.07 -16.70 -0.15 4.18 16 17 N -0.48 -9.70 10.45 -11.92 -0.12 -9.82 16 18 C 0.26 5.06 7.91 -155.40 -1.23 3.83 16 19 C -0.29 -4.81 10.91 -39.16 -0.43 -5.23 16 20 C 0.08 1.18 11.95 -17.55 -0.21 0.97 16 21 N -0.33 -6.12 12.65 30.49 0.39 -5.73 16 22 N -0.30 -5.93 3.88 -11.62 -0.05 -5.98 16 23 C 0.14 2.69 10.99 -15.63 -0.17 2.52 16 24 H 0.29 5.81 8.30 -40.82 -0.34 5.47 16 25 H 0.13 2.93 6.34 -52.49 -0.33 2.59 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 28 H 0.19 3.71 6.80 -52.48 -0.36 3.35 16 29 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.17 3.21 8.06 -52.49 -0.42 2.78 16 LS Contribution 277.14 15.07 4.18 4.18 Total: -1.00 -25.91 277.14 -7.54 -33.45 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.27 Total: 9.10 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -5.14 Total: -10.13 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.73 Total: -48.05 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.91 -7.54 -33.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240418127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.293 kcal (2) G-P(sol) polarization free energy of solvation -25.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds