Wall clock time and date at job start Mon Mar 30 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86803 * 120.00305 * 2 1 4 4 H 1.48503 * 109.46888 * 270.00084 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47185 * 150.00029 * 3 2 1 7 7 C 1.39943 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00104 * 163.07463 * 7 2 1 9 9 C 1.41021 * 120.00008 * 343.07615 * 7 2 1 10 10 C 1.41329 * 120.54951 * 335.65002 * 9 7 2 11 11 C 1.36541 * 118.42675 * 180.02562 * 10 9 7 12 12 C 1.39985 * 119.46201 * 359.97438 * 11 10 9 13 13 C 1.47839 * 119.45434 * 180.02562 * 12 11 10 14 14 C 1.41666 * 119.98695 * 4.98072 * 13 12 11 15 15 C 1.35682 * 119.62306 * 179.97438 * 14 13 12 16 16 C 1.41036 * 119.43351 * 359.97438 * 15 14 13 17 17 N 1.32239 * 133.24017 * 180.02562 * 16 15 14 18 18 N 1.28649 * 109.55542 * 179.97438 * 17 16 15 19 19 C 1.30779 * 110.31400 * 359.97438 * 18 17 16 20 20 N 1.36235 * 107.45200 * 359.97438 * 19 18 17 21 21 C 1.36021 * 133.52052 * 180.32185 * 20 19 18 22 22 N 1.33067 * 121.08793 * 359.97438 * 12 11 10 23 23 C 1.31259 * 121.71394 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.78883 * 0.04678 * 10 9 7 26 26 H 1.07992 * 120.27210 * 179.97438 * 11 10 9 27 27 H 1.08004 * 120.19078 * 359.95450 * 14 13 12 28 28 H 1.08001 * 120.28574 * 180.02562 * 15 14 13 29 29 H 1.07993 * 126.27771 * 180.02562 * 19 18 17 30 30 H 1.07998 * 119.82413 * 359.90018 * 21 20 19 31 31 H 1.08004 * 119.79461 * 179.72364 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2120 0.0005 8 1 3.0531 -1.2324 -0.2717 9 6 1.3488 -2.4066 0.3566 10 6 0.2000 -2.3754 1.1792 11 6 -0.4039 -3.5579 1.4975 12 6 0.1261 -4.7562 1.0047 13 6 -0.5281 -6.0364 1.3489 14 6 -1.7402 -6.0374 2.0823 15 6 -2.3346 -7.2167 2.3938 16 6 -1.7356 -8.4250 1.9813 17 7 -2.0665 -9.6968 2.1289 18 7 -1.1825 -10.4403 1.5626 19 6 -0.2457 -9.7027 1.0252 20 7 -0.5610 -8.4000 1.2692 21 6 0.0316 -7.2176 0.9518 22 7 1.2085 -4.7618 0.2307 23 6 1.8241 -3.6515 -0.1029 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1913 -1.4384 1.5470 26 1 -1.2832 -3.5688 2.1243 27 1 -2.1884 -5.1048 2.3920 28 1 -3.2590 -7.2299 2.9521 29 1 0.6189 -10.0606 0.4861 30 1 0.9533 -7.2128 0.3889 31 1 2.7030 -3.6925 -0.7293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245657446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:14 Heat of formation + Delta-G solvation = 128.225120 kcal Electronic energy + Delta-G solvation = -18256.612624 eV Core-core repulsion = 15311.123347 eV Total energy + Delta-G solvation = -2945.489277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.15816 -38.99724 -37.47321 -34.54933 -33.74774 -31.81475 -31.00290 -29.59125 -28.93074 -25.94177 -24.03979 -23.24409 -22.13936 -21.59084 -21.11775 -17.87528 -17.73644 -16.95601 -16.22630 -16.15277 -15.41905 -15.03000 -14.47952 -14.33533 -14.07049 -13.61738 -13.04271 -12.53130 -12.10656 -11.96651 -11.83810 -11.79226 -11.58385 -11.40199 -11.18158 -11.00626 -10.86067 -10.35206 -10.18439 -9.80192 -9.32816 -8.62577 -8.40100 -8.12107 -7.49308 -7.22444 -4.80393 0.87257 1.25935 2.33904 2.67479 2.72905 2.81498 2.82107 2.87926 3.10167 3.56336 3.67522 4.31539 4.35139 4.73143 4.86617 4.98127 5.17275 5.20432 5.36045 5.71759 5.77467 5.94570 6.12556 6.22054 6.31453 6.39423 6.52761 6.58228 6.66517 6.76623 6.93485 7.16873 7.40426 7.51123 7.61264 8.06427 8.25679 8.34467 8.76868 9.24466 9.63442 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.057455 B = 0.003853 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.220828 B = 7265.678273 C = 7686.701800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.422 4.422 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.144 4.144 11 C -0.114 4.114 12 C -0.015 4.015 13 C 0.007 3.993 14 C -0.072 4.072 15 C -0.093 4.093 16 C 0.184 3.816 17 N -0.307 5.307 18 N -0.264 5.264 19 C 0.101 3.899 20 N -0.374 5.374 21 C 0.031 3.969 22 N -0.448 5.448 23 C -0.012 4.012 24 H 0.290 0.710 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.221 0.779 30 H 0.176 0.824 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -1.968 1.759 2.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.152 4.152 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.065 3.935 10 C -0.168 4.168 11 C -0.134 4.134 12 C -0.149 4.149 13 C 0.003 3.997 14 C -0.097 4.097 15 C -0.114 4.114 16 C -0.065 4.065 17 N -0.155 5.155 18 N -0.104 5.104 19 C -0.181 4.181 20 N -0.051 5.051 21 C -0.092 4.092 22 N -0.156 5.156 23 C -0.179 4.179 24 H 0.102 0.898 25 H 0.147 0.853 26 H 0.122 0.878 27 H 0.165 0.835 28 H 0.170 0.830 29 H 0.237 0.763 30 H 0.193 0.807 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.743 -4.027 1.857 4.497 hybrid contribution 0.786 2.802 -0.264 2.922 sum 0.043 -1.225 1.593 2.010 Atomic orbital electron populations 1.69783 1.07959 1.30580 1.30727 1.26148 0.94931 1.02264 0.91854 0.86116 0.80651 0.79323 0.79790 1.18928 1.19623 1.17948 1.19768 0.98212 0.90871 1.36144 0.89157 1.18646 0.91997 0.93731 0.89111 1.21328 0.98617 0.97053 0.99825 1.21232 0.99164 0.93090 0.99926 1.18275 0.98568 0.89498 1.08530 1.18191 0.93628 0.91671 0.96226 1.21372 0.94089 0.98417 0.95867 1.20070 1.01354 0.87350 1.02666 1.22378 0.88047 0.96474 0.99649 1.74801 1.21320 0.97197 1.22139 1.74060 1.00220 1.26741 1.09426 1.26319 1.04632 0.78074 1.09123 1.43705 1.18511 1.07533 1.35383 1.21659 1.01182 0.81342 1.05023 1.66840 1.06480 1.32329 1.09937 1.22442 1.02597 0.87645 1.05173 0.89832 0.85314 0.87811 0.83480 0.82953 0.76294 0.80662 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.92 10.92 55.55 0.61 -16.31 16 2 C 0.07 1.49 5.18 -17.33 -0.09 1.40 16 3 Si 0.92 15.75 29.59 -169.99 -5.03 10.72 16 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 5 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 6 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 7 C -0.42 -9.47 9.06 -37.89 -0.34 -9.81 16 8 H 0.09 1.90 7.90 -52.48 -0.41 1.48 16 9 C 0.07 1.62 5.59 -106.64 -0.60 1.03 16 10 C -0.14 -3.22 8.73 -39.02 -0.34 -3.56 16 11 C -0.11 -2.30 9.38 -39.54 -0.37 -2.67 16 12 C -0.02 -0.31 6.73 -82.75 -0.56 -0.87 16 13 C 0.01 0.12 5.84 -105.25 -0.61 -0.49 16 14 C -0.07 -1.08 9.40 -39.19 -0.37 -1.45 16 15 C -0.09 -1.35 10.09 -39.44 -0.40 -1.75 16 16 C 0.18 3.15 7.91 -155.99 -1.23 1.92 16 17 N -0.31 -5.71 12.30 31.18 0.38 -5.33 16 18 N -0.26 -4.67 12.18 29.88 0.36 -4.31 16 19 C 0.10 1.51 12.97 -89.04 -1.16 0.36 16 20 N -0.37 -6.14 2.94 -63.56 -0.19 -6.33 16 21 C 0.03 0.52 10.53 -16.28 -0.17 0.35 16 22 N -0.45 -9.63 9.33 -9.11 -0.08 -9.72 16 23 C -0.01 -0.26 10.97 -16.77 -0.18 -0.45 16 24 H 0.29 5.74 8.30 -40.82 -0.34 5.40 16 25 H 0.13 2.92 6.21 -52.49 -0.33 2.60 16 26 H 0.10 1.77 6.17 -52.49 -0.32 1.44 16 27 H 0.15 1.86 6.22 -52.48 -0.33 1.53 16 28 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.22 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.18 2.79 7.44 -52.49 -0.39 2.40 16 31 H 0.13 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -26.77 277.37 -8.38 -35.14 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -2.18 Total: 7.94 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -6.42 Total: -16.00 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.08 Total: -41.99 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.03 Total: 10.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.77 -8.38 -35.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245657446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.367 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds