Wall clock time and date at job start Mon Mar 30 2020 00:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86803 * 120.00305 * 2 1 4 4 H 1.48503 * 109.46888 * 270.00084 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47185 * 150.00029 * 3 2 1 7 7 C 1.39943 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00104 * 163.07463 * 7 2 1 9 9 C 1.41021 * 120.00008 * 343.07615 * 7 2 1 10 10 C 1.41329 * 120.54951 * 335.65002 * 9 7 2 11 11 C 1.36541 * 118.42675 * 180.02562 * 10 9 7 12 12 C 1.39985 * 119.46201 * 359.97438 * 11 10 9 13 13 C 1.47839 * 119.45434 * 180.02562 * 12 11 10 14 14 C 1.41666 * 119.98695 * 4.98072 * 13 12 11 15 15 C 1.35682 * 119.62306 * 179.97438 * 14 13 12 16 16 C 1.41036 * 119.43351 * 359.97438 * 15 14 13 17 17 N 1.32239 * 133.24017 * 180.02562 * 16 15 14 18 18 N 1.28649 * 109.55542 * 179.97438 * 17 16 15 19 19 C 1.30779 * 110.31400 * 359.97438 * 18 17 16 20 20 N 1.36235 * 107.45200 * 359.97438 * 19 18 17 21 21 C 1.36021 * 133.52052 * 180.32185 * 20 19 18 22 22 N 1.33067 * 121.08793 * 359.97438 * 12 11 10 23 23 C 1.31259 * 121.71394 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.78883 * 0.04678 * 10 9 7 26 26 H 1.07992 * 120.27210 * 179.97438 * 11 10 9 27 27 H 1.08004 * 120.19078 * 359.95450 * 14 13 12 28 28 H 1.08001 * 120.28574 * 180.02562 * 15 14 13 29 29 H 1.07993 * 126.27771 * 180.02562 * 19 18 17 30 30 H 1.07998 * 119.82413 * 359.90018 * 21 20 19 31 31 H 1.08004 * 119.79461 * 179.72364 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2120 0.0005 8 1 3.0531 -1.2324 -0.2717 9 6 1.3488 -2.4066 0.3566 10 6 0.2000 -2.3754 1.1792 11 6 -0.4039 -3.5579 1.4975 12 6 0.1261 -4.7562 1.0047 13 6 -0.5281 -6.0364 1.3489 14 6 -1.7402 -6.0374 2.0823 15 6 -2.3346 -7.2167 2.3938 16 6 -1.7356 -8.4250 1.9813 17 7 -2.0665 -9.6968 2.1289 18 7 -1.1825 -10.4403 1.5626 19 6 -0.2457 -9.7027 1.0252 20 7 -0.5610 -8.4000 1.2692 21 6 0.0316 -7.2176 0.9518 22 7 1.2085 -4.7618 0.2307 23 6 1.8241 -3.6515 -0.1029 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1913 -1.4384 1.5470 26 1 -1.2832 -3.5688 2.1243 27 1 -2.1884 -5.1048 2.3920 28 1 -3.2590 -7.2299 2.9521 29 1 0.6189 -10.0606 0.4861 30 1 0.9533 -7.2128 0.3889 31 1 2.7030 -3.6925 -0.7293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245657446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:13 Heat of formation + Delta-G solvation = 116.603173 kcal Electronic energy + Delta-G solvation = -18257.116589 eV Core-core repulsion = 15311.123347 eV Total energy + Delta-G solvation = -2945.993243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.44197 -40.53878 -38.84912 -36.12028 -35.02085 -33.25157 -32.62218 -31.04985 -30.26243 -27.48590 -25.41783 -24.61604 -23.42694 -23.13310 -22.63421 -19.41523 -19.11447 -18.25208 -17.68292 -17.45048 -16.87291 -16.48620 -15.80044 -15.69708 -15.48330 -14.97848 -14.60150 -13.95997 -13.61364 -13.48563 -13.28593 -13.21086 -12.99515 -12.79332 -12.54242 -12.27283 -12.20471 -11.74309 -11.63798 -11.31694 -10.74600 -10.27513 -10.04308 -9.54459 -8.94473 -8.76782 -6.47173 -0.40707 -0.01575 0.83598 1.07962 1.40838 1.41516 1.48013 1.55742 1.77266 2.14813 2.33998 2.76348 3.13790 3.42044 3.63036 3.71284 3.81309 3.93608 3.97423 4.29624 4.44889 4.64513 4.76941 4.78536 4.93352 5.00542 5.06724 5.10480 5.21403 5.34266 5.42758 5.72294 5.86576 5.94390 5.99546 6.42163 6.63437 6.69967 7.47829 7.58871 8.10712 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.057455 B = 0.003853 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.220828 B = 7265.678273 C = 7686.701800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.045 3.955 10 C -0.162 4.162 11 C -0.115 4.115 12 C -0.013 4.013 13 C -0.013 4.013 14 C -0.068 4.068 15 C -0.087 4.087 16 C 0.173 3.827 17 N -0.335 5.335 18 N -0.293 5.293 19 C 0.119 3.881 20 N -0.384 5.384 21 C 0.046 3.954 22 N -0.457 5.457 23 C -0.031 4.031 24 H 0.298 0.702 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.172 0.828 28 H 0.184 0.816 29 H 0.264 0.736 30 H 0.181 0.819 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -2.208 2.157 3.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.040 3.960 10 C -0.187 4.187 11 C -0.135 4.135 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.093 4.093 15 C -0.107 4.107 16 C -0.077 4.077 17 N -0.182 5.182 18 N -0.132 5.132 19 C -0.164 4.164 20 N -0.062 5.062 21 C -0.078 4.078 22 N -0.165 5.165 23 C -0.196 4.196 24 H 0.109 0.891 25 H 0.138 0.862 26 H 0.155 0.845 27 H 0.189 0.811 28 H 0.202 0.798 29 H 0.279 0.721 30 H 0.199 0.801 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.029 -4.301 2.254 4.964 hybrid contribution 0.812 2.599 -0.370 2.747 sum -0.217 -1.703 1.884 2.549 Atomic orbital electron populations 1.69811 1.09182 1.31751 1.31615 1.26899 0.95541 1.04917 0.90883 0.85095 0.79193 0.75244 0.79735 1.18585 1.18962 1.17929 1.20005 0.98659 0.91731 1.38025 0.88885 1.18939 0.92769 0.94470 0.89843 1.21387 0.99170 0.97612 1.00542 1.21550 0.99897 0.92283 0.99812 1.18745 0.97914 0.90879 1.07210 1.18206 0.94994 0.90664 0.97869 1.21533 0.92997 0.99618 0.95104 1.20434 1.02103 0.86076 1.02127 1.22865 0.88375 0.96882 0.99555 1.74745 1.22239 0.97951 1.23256 1.74014 1.01105 1.27460 1.10617 1.27226 1.04650 0.77283 1.07232 1.43845 1.18640 1.07842 1.35835 1.21704 1.00885 0.81347 1.03819 1.66881 1.07088 1.32063 1.10437 1.22630 1.03368 0.87729 1.05907 0.89122 0.86197 0.84537 0.81104 0.79835 0.72085 0.80146 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.75 10.92 21.83 0.24 -35.52 16 2 C 0.04 1.57 5.18 85.25 0.44 2.01 16 3 Si 0.99 32.22 29.59 68.60 2.03 34.25 16 4 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 5 H -0.27 -8.29 7.11 99.48 0.71 -7.58 16 6 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 7 C -0.46 -21.01 9.06 23.37 0.21 -20.80 16 8 H 0.09 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.04 2.11 5.59 -21.17 -0.12 1.99 16 10 C -0.16 -7.35 8.73 22.63 0.20 -7.15 16 11 C -0.12 -4.56 9.38 22.30 0.21 -4.35 16 12 C -0.01 -0.51 6.73 41.92 0.28 -0.22 16 13 C -0.01 -0.43 5.84 -20.27 -0.12 -0.55 16 14 C -0.07 -1.81 9.40 22.52 0.21 -1.60 16 15 C -0.09 -2.24 10.09 22.36 0.23 -2.02 16 16 C 0.17 5.55 7.91 134.13 1.06 6.61 16 17 N -0.34 -11.94 12.30 -55.26 -0.68 -12.62 16 18 N -0.29 -9.87 12.18 -59.39 -0.72 -10.59 16 19 C 0.12 3.26 12.97 179.80 2.33 5.59 16 20 N -0.38 -11.67 2.94 -355.00 -1.04 -12.71 16 21 C 0.05 1.43 10.53 83.66 0.88 2.31 16 22 N -0.46 -19.49 9.33 -182.72 -1.70 -21.19 16 23 C -0.03 -1.40 10.97 85.44 0.94 -0.47 16 24 H 0.30 11.86 8.30 -92.71 -0.77 11.09 16 25 H 0.12 5.57 6.21 -2.91 -0.02 5.55 16 26 H 0.14 4.33 6.17 -2.91 -0.02 4.31 16 27 H 0.17 3.68 6.22 -2.91 -0.02 3.66 16 28 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.26 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.18 5.39 7.44 -2.91 -0.02 5.36 16 31 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -58.20 277.37 6.05 -52.14 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.18 Total: 24.89 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 6.75 Total: -18.65 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.91 Total: -92.63 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.03 Total: 34.25 kcal Total: -58.20 6.05 -52.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245657446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.748 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds