Wall clock time and date at job start Mon Mar 30 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 S 1.81405 * 109.47169 * 269.97864 * 8 7 6 10 10 C 1.81396 * 102.99832 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46919 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47012 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99836 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00058 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47442 * 89.99957 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00264 * 17 15 13 20 20 H 1.48507 * 109.46898 * 329.99834 * 17 15 13 21 21 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 26 26 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 27 27 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 28 28 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 29 29 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 30 30 H 1.09002 * 109.47180 * 299.99677 * 10 9 8 31 31 H 1.08998 * 109.47234 * 60.00067 * 10 9 8 32 32 H 1.08991 * 109.47189 * 300.00456 * 11 10 9 33 33 H 1.08998 * 109.46955 * 60.00090 * 11 10 9 34 34 H 1.09002 * 109.47152 * 299.99983 * 12 11 10 35 35 H 1.08998 * 109.47051 * 60.00243 * 12 11 10 36 36 H 0.97000 * 119.99469 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.02917 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 16 6.1647 2.6303 -1.7101 10 6 7.9645 2.7266 -1.5055 11 6 8.6330 2.7615 -2.8813 12 6 10.1510 2.8433 -2.7088 13 6 10.8094 2.8784 -4.0639 14 1 10.2055 2.8460 -4.9586 15 6 12.1828 2.9518 -4.1614 16 7 12.9181 2.9918 -3.0718 17 14 12.9989 2.9945 -5.8411 18 1 13.1405 4.4038 -6.2871 19 1 14.3413 2.3653 -5.7553 20 1 12.1639 2.2481 -6.8163 21 6 3.4311 1.2849 -0.0001 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2128 2.3203 -0.0106 26 1 1.3339 4.5114 0.0011 27 1 3.7922 4.6381 0.0002 28 1 5.8756 3.5067 0.5138 29 1 5.9714 1.7293 0.5143 30 1 8.2196 3.6316 -0.9541 31 1 8.3146 1.8542 -0.9539 32 1 8.3778 1.8564 -3.4323 33 1 8.2829 3.6337 -3.4333 34 1 10.4058 3.7488 -2.1579 35 1 10.5014 1.9714 -2.1566 36 1 13.8843 3.0438 -3.1404 37 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161067628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:26 Heat of formation + Delta-G solvation = -37.723665 kcal Electronic energy + Delta-G solvation = -16457.017163 eV Core-core repulsion = 13711.023350 eV Total energy + Delta-G solvation = -2745.993813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33335 -37.84433 -34.43488 -32.75344 -32.00773 -30.70866 -27.85009 -27.50976 -26.80851 -23.39491 -22.75308 -21.44604 -20.19408 -18.04976 -16.51187 -16.43040 -16.18953 -16.02579 -15.66107 -14.76464 -14.56751 -14.47308 -14.15826 -13.80939 -13.42880 -12.79033 -12.69525 -12.49861 -12.29127 -11.92280 -11.69426 -11.61994 -11.28707 -11.05870 -10.88236 -10.86058 -10.52292 -9.86235 -9.77588 -9.29717 -9.12015 -8.89798 -8.39135 -8.35835 -7.40901 -6.00932 -4.03291 0.89072 1.25990 2.09169 2.88920 3.00236 3.32894 3.38884 3.43058 3.64852 4.46350 4.47318 4.54397 4.76452 4.82173 4.83827 4.94498 5.12736 5.15826 5.26845 5.35042 5.44399 5.51460 5.53105 5.66004 5.81790 6.06688 6.14886 6.21651 6.39512 6.51703 6.57345 6.73680 7.03532 7.15751 7.64517 7.76802 7.98235 8.40228 9.03210 9.60863 11.10445 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045443 B = 0.002673 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.013432 B =10474.256190 C =10667.466184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.208 4.208 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.026 4.026 8 C -0.053 4.053 9 S -0.265 6.265 10 C -0.076 4.076 11 C -0.095 4.095 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.134 4.134 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.663 -1.753 9.654 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.228 4.228 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.027 4.027 8 C -0.200 4.200 9 S -0.035 6.035 10 C -0.224 4.224 11 C -0.134 4.134 12 C -0.012 4.012 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.155 4.155 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.955 -1.977 8.776 26.527 hybrid contribution 0.988 0.227 0.267 1.049 sum -23.967 -1.749 9.043 25.676 Atomic orbital electron populations 1.23044 0.78473 1.03913 1.01282 1.86083 1.21299 1.26926 1.88796 1.18937 0.92154 0.84176 0.96727 1.21227 0.99923 0.92456 1.09181 1.20897 0.94415 0.97005 0.97582 1.20982 0.93718 0.98094 1.03074 1.19042 0.93351 0.92699 0.97649 1.22271 0.94118 1.05759 0.97892 1.87139 1.08755 1.97831 1.09751 1.23662 0.90231 1.04343 1.04143 1.21461 0.98615 1.01587 0.91697 1.19105 0.87310 0.97358 0.97379 1.21227 0.91561 1.50438 0.92613 0.92541 1.25026 0.97527 0.95281 0.96651 1.69966 1.05385 1.50731 1.27474 0.86567 0.78741 0.78192 0.84364 1.20630 1.21211 1.19817 1.20285 0.91384 0.98240 1.05543 0.92733 0.92644 0.88260 0.85574 0.85618 0.85510 0.89060 0.89152 0.90513 0.90505 0.92376 0.92399 0.96439 0.96415 0.92978 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.40 10.50 -19.44 -0.20 -3.60 16 3 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 4 C -0.21 -2.01 9.04 -39.43 -0.36 -2.36 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.14 -1.50 9.70 -39.56 -0.38 -1.89 16 7 C -0.03 -0.31 5.14 -104.65 -0.54 -0.85 16 8 C -0.05 -0.65 6.07 36.01 0.22 -0.43 16 9 S -0.27 -4.21 21.72 -107.50 -2.33 -6.54 16 10 C -0.08 -1.32 5.94 37.16 0.22 -1.10 16 11 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 12 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.13 -1.63 9.64 -39.44 -0.38 -2.01 16 22 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 23 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 26 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 29 H 0.09 1.03 8.08 -51.92 -0.42 0.61 16 30 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -31.54 328.13 -9.19 -40.72 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.74 Total: -3.35 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.57 Total: -22.72 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.33 Total: -6.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.54 -9.19 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161067628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.001 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds