Wall clock time and date at job start Mon Mar 30 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 S 1.81405 * 109.47169 * 269.97864 * 8 7 6 10 10 C 1.81396 * 102.99832 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46919 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47012 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99836 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00058 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47442 * 89.99957 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00264 * 17 15 13 20 20 H 1.48507 * 109.46898 * 329.99834 * 17 15 13 21 21 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 26 26 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 27 27 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 28 28 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 29 29 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 30 30 H 1.09002 * 109.47180 * 299.99677 * 10 9 8 31 31 H 1.08998 * 109.47234 * 60.00067 * 10 9 8 32 32 H 1.08991 * 109.47189 * 300.00456 * 11 10 9 33 33 H 1.08998 * 109.46955 * 60.00090 * 11 10 9 34 34 H 1.09002 * 109.47152 * 299.99983 * 12 11 10 35 35 H 1.08998 * 109.47051 * 60.00243 * 12 11 10 36 36 H 0.97000 * 119.99469 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.02917 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 16 6.1647 2.6303 -1.7101 10 6 7.9645 2.7266 -1.5055 11 6 8.6330 2.7615 -2.8813 12 6 10.1510 2.8433 -2.7088 13 6 10.8094 2.8784 -4.0639 14 1 10.2055 2.8460 -4.9586 15 6 12.1828 2.9518 -4.1614 16 7 12.9181 2.9918 -3.0718 17 14 12.9989 2.9945 -5.8411 18 1 13.1405 4.4038 -6.2871 19 1 14.3413 2.3653 -5.7553 20 1 12.1639 2.2481 -6.8163 21 6 3.4311 1.2849 -0.0001 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2128 2.3203 -0.0106 26 1 1.3339 4.5114 0.0011 27 1 3.7922 4.6381 0.0002 28 1 5.8756 3.5067 0.5138 29 1 5.9714 1.7293 0.5143 30 1 8.2196 3.6316 -0.9541 31 1 8.3146 1.8542 -0.9539 32 1 8.3778 1.8564 -3.4323 33 1 8.2829 3.6337 -3.4333 34 1 10.4058 3.7488 -2.1579 35 1 10.5014 1.9714 -2.1566 36 1 13.8843 3.0438 -3.1404 37 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161067628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:26 Heat of formation + Delta-G solvation = -54.106534 kcal Electronic energy + Delta-G solvation = -16457.727577 eV Core-core repulsion = 13711.023350 eV Total energy + Delta-G solvation = -2746.704228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08326 -38.59916 -36.36432 -34.04833 -33.58703 -31.46293 -29.46547 -28.45640 -27.65696 -25.33735 -23.54490 -22.46380 -21.82680 -18.85953 -18.50759 -17.25937 -17.04538 -16.94883 -16.64967 -16.52533 -16.22468 -15.45262 -15.13804 -14.81137 -14.45152 -14.32729 -13.88995 -13.77908 -13.33442 -13.31932 -12.87092 -12.76766 -12.73048 -12.56798 -12.36688 -11.99009 -11.79914 -11.65828 -11.44178 -11.21201 -10.89127 -10.56771 -9.79286 -9.18262 -8.66665 -8.21704 -6.32731 -0.02709 0.45995 0.98256 1.40203 1.41450 1.52862 1.66611 2.35326 2.40800 2.83500 3.11582 3.62421 3.82719 3.99856 4.04261 4.10418 4.16366 4.30030 4.36884 4.40445 4.48538 4.58469 4.59386 4.71320 4.74440 4.81693 4.97047 5.02383 5.12908 5.29328 5.44321 5.48315 5.57593 5.67692 5.76502 5.81617 6.21918 6.44639 6.82789 7.36391 8.90064 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045443 B = 0.002673 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.013432 B =10474.256190 C =10667.466184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.205 4.205 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.041 4.041 8 C -0.039 4.039 9 S -0.286 6.286 10 C -0.069 4.069 11 C -0.081 4.081 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.154 4.154 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.116 0.884 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.137 0.863 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.055 0.945 34 H -0.002 1.002 35 H -0.003 1.003 36 H 0.265 0.735 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.540 -1.260 9.410 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.068 3.932 4 C -0.224 4.224 5 C -0.098 4.098 6 C -0.167 4.167 7 C -0.043 4.043 8 C -0.186 4.186 9 S -0.056 6.056 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.175 4.175 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.134 0.866 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.155 0.845 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.073 0.927 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.841 -1.485 8.528 28.202 hybrid contribution 1.418 0.045 0.419 1.479 sum -25.423 -1.440 8.947 26.990 Atomic orbital electron populations 1.23348 0.76316 1.05551 1.02374 1.86056 1.23624 1.26931 1.88765 1.19108 0.92125 0.85111 0.96893 1.21568 1.01296 0.91833 1.07703 1.21272 0.94126 0.98152 0.96218 1.21225 0.94560 0.98072 1.02891 1.19051 0.92967 0.93216 0.99050 1.22309 0.94564 1.06879 0.94894 1.87143 1.06873 1.97926 1.13678 1.23381 0.91759 1.04864 1.01727 1.21163 0.95678 1.01144 0.93955 1.18981 0.90623 0.95300 0.95882 1.21664 0.92345 1.50626 0.93717 0.92377 1.25969 0.98241 0.94639 1.00894 1.70087 1.05833 1.51393 1.29875 0.85439 0.77660 0.78640 0.79277 1.19640 1.20549 1.18929 1.20382 0.92252 0.98178 1.06692 0.91327 0.91726 0.86555 0.82915 0.82717 0.84493 0.87583 0.88457 0.89880 0.90179 0.92853 0.92648 0.98394 0.98510 0.92666 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.92 10.50 -92.48 -0.97 -7.89 16 3 C 0.11 2.43 6.69 22.50 0.15 2.58 16 4 C -0.20 -3.44 9.04 22.37 0.20 -3.24 16 5 C -0.08 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.15 -2.92 9.70 22.28 0.22 -2.71 16 7 C -0.04 -0.96 5.14 -19.88 -0.10 -1.06 16 8 C -0.04 -0.93 6.07 71.24 0.43 -0.50 16 9 S -0.29 -8.97 21.72 -56.49 -1.23 -10.19 16 10 C -0.07 -2.42 5.94 71.98 0.43 -1.99 16 11 C -0.08 -3.46 5.16 30.59 0.16 -3.31 16 12 C 0.03 1.65 4.97 29.85 0.15 1.80 16 13 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 14 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 17 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.15 -3.71 9.64 22.36 0.22 -3.49 16 22 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 23 H 0.06 0.56 7.65 -2.39 -0.02 0.54 16 24 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 25 H 0.15 1.65 6.30 -2.91 -0.02 1.64 16 26 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 27 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 28 H 0.11 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -68.08 328.13 5.02 -63.06 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.03 Total: 7.51 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 3.88 Total: -42.65 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.69 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.97 Total: -7.89 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.23 Total: -10.19 kcal Total: -68.08 5.02 -63.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161067628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.956 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds