Wall clock time and date at job start Mon Mar 30 2020 00:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 S 1.81404 * 109.47233 * 270.02290 * 8 7 6 10 10 C 1.81398 * 102.99925 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.46884 * 304.99971 * 10 9 8 12 12 C 1.52999 * 109.47039 * 65.00163 * 10 9 8 13 13 C 1.53002 * 109.46639 * 184.99872 * 10 9 8 14 14 C 1.50698 * 109.47008 * 65.00036 * 13 10 9 15 15 H 1.08000 * 120.00450 * 359.97438 * 14 13 10 16 16 C 1.37881 * 119.99850 * 179.97438 * 14 13 10 17 17 N 1.31522 * 119.99943 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99967 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47312 * 60.00019 * 18 16 14 20 20 H 1.48506 * 109.46858 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46812 * 299.99562 * 18 16 14 22 22 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 28 28 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 29 29 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 30 30 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 31 31 H 1.08994 * 109.47091 * 59.99741 * 12 10 9 32 32 H 1.08999 * 109.46657 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.46964 * 299.99437 * 12 10 9 34 34 H 1.09003 * 109.47007 * 184.99801 * 13 10 9 35 35 H 1.09001 * 109.47124 * 304.99834 * 13 10 9 36 36 H 0.96995 * 119.99514 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0000 9 16 6.1644 2.6315 -1.7103 10 6 7.9643 2.7277 -1.5060 11 1 8.2135 3.5836 -0.8789 12 6 8.4715 1.4452 -0.8435 13 6 8.6251 2.8897 -2.8764 14 6 8.2207 4.2118 -3.4759 15 1 7.5583 4.8705 -2.9340 16 6 8.6965 4.5806 -4.7164 17 7 9.5028 3.7782 -5.3766 18 14 8.1958 6.2197 -5.4592 19 1 8.6322 7.3223 -4.5654 20 1 8.8372 6.3769 -6.7894 21 1 6.7195 6.2627 -5.6139 22 6 3.4311 1.2849 0.0001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 -0.0006 28 1 3.7922 4.6381 0.0002 29 1 5.8757 3.5063 0.5142 30 1 5.9715 1.7289 0.5134 31 1 8.2223 0.5893 -1.4706 32 1 9.5530 1.5032 -0.7203 33 1 8.0007 1.3298 0.1327 34 1 9.7088 2.8583 -2.7631 35 1 8.3048 2.0801 -3.5322 36 1 9.8371 4.0375 -6.2494 37 1 4.0206 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188305296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:54 Heat of formation + Delta-G solvation = -32.520260 kcal Electronic energy + Delta-G solvation = -17154.946360 eV Core-core repulsion = 14409.178184 eV Total energy + Delta-G solvation = -2745.768177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14412 -37.64804 -34.49430 -32.55270 -31.96783 -30.50879 -27.75850 -27.41454 -26.50075 -23.26004 -22.55382 -21.39847 -20.32347 -17.83774 -16.32802 -16.28469 -15.98512 -15.86814 -15.52106 -14.58454 -14.50505 -14.21756 -13.96882 -13.41589 -12.93660 -12.78524 -12.58322 -12.27768 -12.03418 -11.79740 -11.59572 -11.53125 -11.26414 -10.91191 -10.83185 -10.69657 -10.47426 -10.32344 -9.45076 -9.20450 -9.00836 -8.65414 -8.31009 -8.18434 -6.85143 -5.96690 -3.97253 1.16108 1.46530 2.50588 3.16069 3.37721 3.39727 3.41898 3.45970 3.87524 4.50838 4.70269 4.74228 4.93270 4.95497 5.03858 5.18556 5.25964 5.37645 5.40677 5.48292 5.66167 5.68163 5.75706 5.82055 6.00938 6.03571 6.26117 6.38317 6.42827 6.63168 6.64085 6.72072 6.76516 7.33654 7.55948 7.67549 8.00996 8.39732 9.07175 9.65821 11.14875 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.004242 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.507711 B = 6599.567424 C = 7155.249010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.018 4.018 8 C -0.072 4.072 9 S -0.217 6.217 10 C -0.047 4.047 11 H 0.073 0.927 12 C -0.145 4.145 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.275 1.275 22 C -0.137 4.137 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 -4.719 13.420 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.019 4.019 8 C -0.219 4.219 9 S 0.013 5.987 10 C -0.176 4.176 11 H 0.092 0.908 12 C -0.204 4.204 13 C 0.002 3.998 14 C -0.552 4.552 15 H 0.081 0.919 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.157 4.157 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.691 -4.951 12.297 20.541 hybrid contribution 0.231 1.098 0.562 1.255 sum -15.460 -3.853 12.859 20.475 Atomic orbital electron populations 1.23019 0.78672 1.03726 1.01240 1.86070 1.21143 1.27061 1.88926 1.18925 0.92163 0.84062 0.96976 1.21178 0.99751 0.92485 1.09717 1.20880 0.94454 0.96914 0.97663 1.20994 0.93650 0.98243 1.03008 1.19084 0.93659 0.92530 0.96654 1.22381 0.93895 1.04979 1.00634 1.87496 1.08083 1.97339 1.05759 1.23426 0.91413 0.98630 1.04142 0.90818 1.22115 1.00898 0.98098 0.99272 1.19003 0.95240 0.98017 0.87509 1.21215 1.28393 1.02964 1.02592 0.91910 1.24989 0.95117 0.97147 0.97109 1.69952 1.33240 1.36666 1.13916 0.86645 0.78952 0.84192 0.78197 1.20297 1.21426 1.20087 1.20256 0.91260 0.98221 1.05952 0.92686 0.88408 0.92835 0.85750 0.85774 0.85523 0.89619 0.89842 0.91910 0.92231 0.94054 0.95015 0.95582 0.92985 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.91 10.50 -19.44 -0.20 -4.11 16 3 C 0.12 1.64 6.69 -39.22 -0.26 1.38 16 4 C -0.21 -2.47 9.04 -39.43 -0.36 -2.83 16 5 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 6 C -0.14 -1.88 9.70 -39.56 -0.38 -2.26 16 7 C -0.02 -0.26 5.14 -104.65 -0.54 -0.80 16 8 C -0.07 -1.08 5.76 36.01 0.21 -0.87 16 9 S -0.22 -4.33 20.44 -107.50 -2.20 -6.53 16 10 C -0.05 -0.98 2.77 -26.73 -0.07 -1.05 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 12 C -0.14 -2.45 9.10 37.16 0.34 -2.12 16 13 C 0.04 1.04 4.45 -27.88 -0.12 0.91 16 14 C -0.51 -14.48 8.53 -34.44 -0.29 -14.78 16 15 H 0.06 1.75 7.60 -52.49 -0.40 1.35 16 16 C 0.06 1.65 5.46 -17.81 -0.10 1.56 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.14 -1.95 9.64 -39.44 -0.38 -2.33 16 23 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 26 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 27 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.09 1.21 8.09 -51.92 -0.42 0.79 16 30 H 0.08 1.15 7.08 -51.92 -0.37 0.78 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.60 6.92 -51.93 -0.36 0.24 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -31.54 323.85 -8.79 -40.33 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.61 Total: -1.91 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -1.37 Total: -23.33 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.20 Total: -6.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.54 -8.79 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188305296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.812 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds