Wall clock time and date at job start Mon Mar 30 2020 00:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00061 * 2 1 4 4 C 1.38751 * 120.05337 * 0.02585 * 3 2 1 5 5 C 1.38125 * 119.93883 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.06068 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11147 * 359.74835 * 6 5 4 8 8 C 1.38174 * 120.04977 * 0.51145 * 7 6 5 9 9 C 1.50702 * 120.02521 * 179.76768 * 8 7 6 10 10 H 1.08990 * 109.47303 * 214.72131 * 9 8 7 11 11 C 1.53008 * 109.47033 * 94.71785 * 9 8 7 12 12 S 1.81401 * 109.47253 * 334.72171 * 9 8 7 13 13 C 1.81391 * 103.00187 * 185.00099 * 12 9 8 14 14 C 1.53006 * 109.47235 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 H 1.09006 * 109.46627 * 299.99669 * 1 2 3 24 24 H 1.08999 * 109.47225 * 59.99819 * 1 2 3 25 25 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.03216 * 359.95209 * 4 3 2 27 27 H 1.08003 * 119.96631 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.94656 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.97530 * 180.25203 * 7 6 5 30 30 H 1.08998 * 109.46736 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.47003 * 300.00048 * 11 9 8 32 32 H 1.08995 * 109.46972 * 60.00095 * 11 9 8 33 33 H 1.09001 * 109.47423 * 60.00142 * 13 12 9 34 34 H 1.09001 * 109.47260 * 300.00005 * 13 12 9 35 35 H 1.09001 * 109.47002 * 299.99604 * 14 13 12 36 36 H 1.08993 * 109.46955 * 60.00042 * 14 13 12 37 37 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0016 7 6 4.0560 2.5171 0.0069 8 6 3.4311 1.2848 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.7470 -0.7419 -0.5882 11 6 4.4263 -0.4737 1.4386 12 16 5.8828 0.3614 -0.7208 13 6 6.6551 -1.2790 -0.7746 14 6 8.0603 -1.1620 -1.3686 15 6 8.7016 -2.5249 -1.4138 16 1 8.1612 -3.3882 -1.0544 17 6 9.9786 -2.6697 -1.9131 18 7 10.6368 -1.6184 -2.3503 19 14 10.7739 -4.3590 -1.9685 20 1 9.8316 -5.3680 -1.4211 21 1 11.1071 -4.7035 -3.3740 22 1 12.0154 -4.3487 -1.1537 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2129 2.3204 0.0002 27 1 1.3340 4.5113 0.0011 28 1 3.7923 4.6380 0.0024 29 1 5.1345 2.5751 0.0114 30 1 5.0216 -1.3867 1.4389 31 1 4.9331 0.2903 2.0281 32 1 3.4474 -0.6776 1.8725 33 1 6.0528 -1.9441 -1.3935 34 1 6.7206 -1.6831 0.2357 35 1 7.9951 -0.7579 -2.3788 36 1 8.6623 -0.4971 -0.7494 37 1 11.5354 -1.7202 -2.7012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266247217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:33 Heat of formation + Delta-G solvation = -48.960140 kcal Electronic energy + Delta-G solvation = -17303.126486 eV Core-core repulsion = 14556.645422 eV Total energy + Delta-G solvation = -2746.481063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22356 -38.40041 -35.79018 -35.26649 -32.94215 -31.15735 -30.47553 -28.10729 -27.27371 -25.06812 -23.32983 -23.11879 -21.99026 -18.96992 -18.67176 -17.55491 -17.18025 -16.65251 -16.51157 -16.18021 -15.65301 -15.43120 -15.23976 -14.94850 -14.46188 -14.34006 -14.05283 -13.62740 -13.26991 -13.12425 -12.91541 -12.77134 -12.69165 -12.44256 -12.31538 -12.12978 -11.98318 -11.74128 -11.62784 -11.16259 -10.66709 -10.61497 -9.82797 -9.12444 -8.63929 -8.23283 -6.36890 0.29484 0.45042 0.81356 1.40699 1.41266 1.54890 1.72948 2.38306 2.40439 2.78960 3.09805 3.55815 3.93850 4.09349 4.11096 4.14196 4.25107 4.32979 4.38802 4.42374 4.46453 4.51768 4.69343 4.72637 4.76664 4.82222 4.90679 5.02503 5.16336 5.33360 5.37802 5.47469 5.49754 5.60663 5.73632 5.85531 6.11341 6.45315 6.77176 7.32524 8.88821 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.003755 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.690671 B = 7454.163958 C = 8005.105768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.159 4.159 7 C -0.086 4.086 8 C -0.116 4.116 9 C 0.003 3.997 10 H 0.086 0.914 11 C -0.131 4.131 12 S -0.293 6.293 13 C -0.054 4.054 14 C 0.046 3.954 15 C -0.542 4.542 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.973 3.027 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.114 0.886 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.076 0.924 35 H -0.005 1.005 36 H -0.002 1.002 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 7.569 7.122 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.096 4.096 6 C -0.177 4.177 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.125 4.125 10 H 0.104 0.896 11 C -0.190 4.190 12 S -0.064 6.064 13 C -0.202 4.202 14 C 0.008 3.992 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.132 0.868 26 H 0.174 0.826 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.283 8.383 6.715 24.736 hybrid contribution 0.276 -1.728 0.031 1.750 sum -22.007 6.655 6.746 23.960 Atomic orbital electron populations 1.23351 0.76377 1.05443 1.02433 1.86070 1.23499 1.26733 1.88553 1.18873 0.90919 0.85474 0.96947 1.21506 1.01179 0.91548 1.08281 1.21340 0.94312 0.98073 0.95914 1.21326 0.94626 0.98324 1.03415 1.21070 1.00408 0.91705 0.97321 1.18753 0.90758 0.93921 1.08337 1.21724 0.92688 0.98195 0.99907 0.89615 1.21949 1.02572 1.01244 0.93257 1.86780 1.17460 1.18415 1.83703 1.23378 0.99693 0.93671 1.03436 1.18666 0.89517 0.96543 0.94511 1.21574 1.00470 0.94054 1.42061 0.91627 1.26024 0.97798 1.01378 0.94472 1.70118 1.12814 1.31660 1.42513 0.85289 0.78312 0.78759 0.78004 1.18360 1.20249 1.20181 0.91200 0.91637 0.86789 0.82593 0.82493 0.83910 0.85860 0.92505 0.91738 0.90497 0.91250 0.90540 0.98655 0.98363 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.62 9.63 -92.43 -0.89 -8.51 16 3 C 0.12 3.04 6.66 22.50 0.15 3.19 16 4 C -0.21 -3.82 9.04 22.37 0.20 -3.62 16 5 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 6 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 7 C -0.09 -2.40 9.10 22.26 0.20 -2.20 16 8 C -0.12 -3.35 5.01 -19.77 -0.10 -3.45 16 9 C 0.00 0.11 2.73 29.85 0.08 0.19 16 10 H 0.09 2.83 7.69 -2.40 -0.02 2.81 16 11 C -0.13 -3.73 9.08 71.98 0.65 -3.08 16 12 S -0.29 -11.63 19.08 -56.49 -1.08 -12.71 16 13 C -0.05 -2.42 5.57 71.98 0.40 -2.01 16 14 C 0.05 2.56 4.98 29.85 0.15 2.71 16 15 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 19 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 25 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.16 1.87 6.30 -2.91 -0.02 1.85 16 27 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.12 3.81 6.49 -2.91 -0.02 3.79 16 30 H 0.06 1.66 6.92 -2.39 -0.02 1.64 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.08 3.24 7.14 -2.39 -0.02 3.23 16 35 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -69.19 320.37 5.38 -63.81 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.04 Total: 10.24 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 4.00 Total: -41.97 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.89 Total: -8.51 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -11.63 SS G_CDS: -1.08 Total: -12.71 kcal Total: -69.19 5.38 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266247217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.854 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds