Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46948 * 120.00137 * 2 1 3 5 5 H 1.07997 * 119.99878 * 119.99636 * 4 2 1 6 6 C 1.37878 * 119.99802 * 300.00082 * 4 2 1 7 7 N 1.31510 * 119.99845 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00004 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47145 * 90.00258 * 8 6 4 10 10 H 1.48503 * 109.47039 * 210.00130 * 8 6 4 11 11 H 1.48507 * 109.47255 * 330.00105 * 8 6 4 12 12 N 1.46499 * 109.47161 * 239.99497 * 2 1 3 13 13 C 1.46498 * 120.00436 * 300.00633 * 12 2 1 14 14 C 1.34781 * 119.99505 * 120.00224 * 12 2 1 15 15 O 1.21606 * 120.00569 * 356.11825 * 14 12 2 16 16 C 1.47297 * 119.99754 * 176.11463 * 14 12 2 17 17 C 1.36572 * 125.80558 * 186.00122 * 16 14 12 18 18 C 1.40064 * 106.92536 * 180.02562 * 17 16 14 19 19 C 1.36571 * 106.92389 * 359.97438 * 18 17 16 20 20 C 1.47289 * 125.79996 * 180.02562 * 19 18 17 21 21 N 1.34775 * 120.00045 * 180.02562 * 20 19 18 22 22 O 1.21609 * 120.00444 * 359.97438 * 20 19 18 23 23 O 1.34542 * 108.39157 * 359.74258 * 19 18 17 24 24 H 1.08995 * 109.47531 * 300.00254 * 1 2 3 25 25 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46731 * 59.99950 * 1 2 3 27 27 H 0.97004 * 119.99765 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47178 * 95.72282 * 13 12 2 29 29 H 1.09008 * 109.47143 * 215.72133 * 13 12 2 30 30 H 1.08999 * 109.47165 * 335.71938 * 13 12 2 31 31 H 1.07996 * 126.53302 * 0.02562 * 17 16 14 32 32 H 1.07999 * 126.53378 * 179.97438 * 18 17 16 33 33 H 0.97005 * 119.99551 * 359.97438 * 21 20 19 34 34 H 0.97000 * 120.00503 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1370 -0.8597 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9953 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0290 1.1472 -1.9279 16 6 3.3547 -0.7526 -3.2410 17 6 4.2420 -0.2407 -4.1442 18 6 4.5082 -1.2542 -5.0736 19 6 3.7725 -2.3416 -4.6977 20 6 3.7419 -3.6419 -5.3889 21 7 2.9697 -4.6394 -4.9143 22 8 4.4126 -3.8153 -6.3883 23 8 3.0852 -2.0252 -3.5852 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.9029 -0.5280 4.4375 28 1 0.7955 -2.1450 -2.0840 29 1 2.5040 -2.6073 -1.8958 30 1 1.4303 -2.5710 -0.4766 31 1 4.6589 0.7555 -4.1421 32 1 5.1693 -1.1882 -5.9251 33 1 2.4343 -4.5010 -4.1173 34 1 2.9497 -5.4958 -5.3692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269477029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = -42.503043 kcal Electronic energy + Delta-G solvation = -20201.018321 eV Core-core repulsion = 16908.524044 eV Total energy + Delta-G solvation = -3292.494277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.87528 -39.52948 -39.04910 -35.86302 -34.13854 -33.26023 -32.77481 -30.98055 -29.67941 -26.49683 -25.31230 -24.72963 -22.51900 -21.30804 -20.60006 -19.44111 -18.33779 -17.37072 -17.10126 -16.76723 -16.39745 -15.90352 -14.98462 -14.86838 -14.56946 -14.17517 -13.56174 -13.39787 -13.22381 -13.07252 -12.95075 -12.60414 -12.30346 -11.89407 -11.51344 -11.26597 -10.83189 -10.78898 -10.27260 -10.18029 -10.09248 -9.84343 -9.62553 -9.42054 -8.84234 -8.73132 -7.96453 -6.24155 -4.26575 0.62581 1.91007 2.33325 2.93789 3.17039 3.17867 3.31428 3.32743 3.42051 3.58327 4.26643 4.50984 4.75813 4.86562 5.08968 5.41360 5.42624 5.69258 5.75923 5.82608 6.10549 6.14027 6.17620 6.25249 6.32786 6.37781 6.55194 6.69897 6.94054 7.02424 7.12764 7.46945 7.81323 7.90786 8.28431 8.50651 8.75920 9.35307 10.88136 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.004917 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.564888 B = 5693.224211 C = 6081.331619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.066 0.934 4 C -0.534 4.534 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.569 5.569 13 C 0.075 3.925 14 C 0.584 3.416 15 O -0.524 6.524 16 C -0.012 4.012 17 C -0.151 4.151 18 C -0.122 4.122 19 C -0.078 4.078 20 C 0.613 3.387 21 N -0.842 5.842 22 O -0.524 6.524 23 O -0.144 6.144 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -5.355 -14.452 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.084 0.916 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.298 5.298 13 C -0.068 4.068 14 C 0.369 3.631 15 O -0.403 6.403 16 C -0.066 4.066 17 C -0.171 4.171 18 C -0.143 4.143 19 C -0.131 4.131 20 C 0.398 3.602 21 N -0.405 5.405 22 O -0.402 6.402 23 O -0.041 6.041 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.239 0.761 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.748 -4.904 -14.574 15.395 hybrid contribution -0.770 0.399 0.450 0.977 sum -1.519 -4.504 -14.124 14.902 Atomic orbital electron populations 1.22451 0.98556 1.01352 0.99530 1.19442 0.90400 0.95206 0.82173 0.91648 1.21106 1.33212 1.14544 0.88312 0.90140 1.24845 0.95553 0.96589 0.95532 1.69864 1.44827 1.40059 0.98051 0.86923 0.80443 0.83732 0.77679 1.20263 1.21984 1.18707 1.47883 1.47351 1.12302 1.22290 1.21937 0.99773 0.82175 1.02934 1.16837 0.79861 0.85953 0.80419 1.90829 1.60982 1.13923 1.74535 1.22958 1.01963 0.82266 0.99428 1.21947 0.99295 1.01616 0.94280 1.21932 1.00248 0.91182 1.00917 1.22267 1.02221 0.97354 0.91288 1.16625 0.79333 0.81481 0.82807 1.43697 1.47944 1.15835 1.33047 1.90901 1.43378 1.81117 1.24769 1.84361 1.55634 1.28115 1.35944 0.92881 0.92385 0.94623 0.92260 0.93244 0.91319 0.88846 0.81470 0.81722 0.76110 0.75883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.67 37.16 0.32 -2.96 16 2 C 0.23 5.27 2.22 -69.08 -0.15 5.12 16 3 H 0.07 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.11 8.53 -34.44 -0.29 -14.41 16 5 H 0.08 2.29 7.68 -52.49 -0.40 1.88 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 8 Si 0.88 20.97 24.37 -169.99 -4.14 16.82 16 9 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 12 N -0.57 -11.29 2.75 -176.59 -0.49 -11.78 16 13 C 0.07 1.16 8.62 59.85 0.52 1.68 16 14 C 0.58 11.49 7.66 -12.58 -0.10 11.39 16 15 O -0.52 -11.83 16.20 5.27 0.09 -11.75 16 16 C -0.01 -0.19 6.79 -36.50 -0.25 -0.43 16 17 C -0.15 -2.10 10.60 -39.50 -0.42 -2.52 16 18 C -0.12 -1.52 10.60 -39.50 -0.42 -1.94 16 19 C -0.08 -0.99 7.13 -36.51 -0.26 -1.25 16 20 C 0.61 7.14 8.08 -12.58 -0.10 7.04 16 21 N -0.84 -6.42 8.87 30.40 0.27 -6.15 16 22 O -0.52 -7.60 17.70 5.27 0.09 -7.51 16 23 O -0.14 -1.95 6.99 4.37 0.03 -1.92 16 24 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 25 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.95 5.31 -51.92 -0.28 0.68 16 30 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 31 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.41 2.49 8.59 -40.82 -0.35 2.14 16 34 H 0.41 2.29 8.93 -40.82 -0.36 1.92 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -32.51 290.94 -3.76 -36.26 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.51 Total: 3.02 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.25 Total: 3.77 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.56 Total: -43.09 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.21 Total: -21.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.51 -3.76 -36.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269477029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.241 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds