Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47700 * 2 1 4 4 O 1.45206 * 109.47340 * 239.99893 * 2 1 3 5 5 C 1.34236 * 116.99698 * 89.99840 * 4 2 1 6 6 O 1.20826 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99529 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.46670 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46755 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99607 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00252 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99730 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47128 * 90.00054 * 13 11 9 15 15 H 1.48502 * 109.46892 * 209.99945 * 13 11 9 16 16 H 1.48500 * 109.47099 * 329.99697 * 13 11 9 17 17 C 1.50699 * 109.47366 * 120.00273 * 2 1 3 18 18 C 1.38265 * 119.99210 * 84.97593 * 17 2 1 19 19 C 1.38223 * 120.05406 * 179.97438 * 18 17 2 20 20 C 1.38223 * 120.02411 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97448 * 359.74760 * 20 19 18 22 22 F 1.35099 * 120.02356 * 180.27548 * 21 20 19 23 23 C 1.38183 * 119.98467 * 265.00326 * 17 2 1 24 24 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46816 * 300.00057 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99881 * 1 2 3 27 27 H 1.09002 * 109.46934 * 299.99360 * 7 5 4 28 28 H 1.08991 * 109.47499 * 59.99718 * 7 5 4 29 29 H 1.09002 * 109.46661 * 299.99210 * 8 7 5 30 30 H 1.08996 * 109.47204 * 59.99414 * 8 7 5 31 31 H 0.97003 * 120.00077 * 179.97438 * 12 11 9 32 32 H 1.08004 * 119.96758 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98736 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.01045 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01017 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2812 6 8 1.9982 1.2519 -2.2504 7 6 2.7183 -0.5772 -3.5495 8 6 2.8636 0.4891 -4.6371 9 6 3.3654 -0.1521 -5.9053 10 1 3.5614 -1.2138 -5.9327 11 6 3.5741 0.6168 -7.0306 12 7 3.3348 1.9096 -6.9974 13 14 4.1953 -0.1780 -8.6028 14 1 3.0399 -0.6215 -9.4233 15 1 4.9992 0.8064 -9.3709 16 1 5.0410 -1.3508 -8.2639 17 6 2.0324 -0.7104 1.2304 18 6 2.1639 -2.0868 1.2285 19 6 2.6251 -2.7397 2.3561 20 6 2.9548 -2.0172 3.4874 21 6 2.8280 -0.6386 3.4889 22 9 3.1553 0.0691 4.5922 23 6 2.3609 0.0139 2.3604 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6873 -1.0408 -3.3640 28 1 2.0089 -1.3370 -3.8774 29 1 1.8948 0.9530 -4.8228 30 1 3.5732 1.2485 -4.3089 31 1 3.4821 2.4506 -7.7890 32 1 1.9061 -2.6522 0.3451 33 1 2.7278 -3.8148 2.3533 34 1 3.3156 -2.5275 4.3682 35 1 2.2580 1.0890 2.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291022614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -125.759314 kcal Electronic energy + Delta-G solvation = -19109.275223 eV Core-core repulsion = 15793.250722 eV Total energy + Delta-G solvation = -3316.024501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.10802 -40.36813 -39.12333 -36.35911 -33.62250 -33.11865 -31.13489 -30.77896 -29.47665 -26.17863 -24.39180 -23.05072 -22.44604 -20.97458 -19.74934 -17.79368 -17.48043 -16.44845 -16.38438 -16.02742 -15.90998 -15.77399 -15.48397 -14.48545 -14.33085 -13.89097 -13.75211 -13.41749 -13.02225 -12.72754 -12.31789 -12.28750 -12.13759 -11.87614 -11.65109 -11.26307 -10.97806 -10.94384 -10.65383 -10.51454 -10.07575 -9.95341 -9.59380 -9.25650 -9.19297 -8.90784 -8.39426 -6.03190 -4.08233 0.86569 0.94418 2.77705 2.94469 3.30525 3.35651 3.37220 3.39960 3.99696 4.34114 4.43055 4.55627 4.75972 4.91586 5.02800 5.04536 5.13712 5.28202 5.32313 5.48202 5.65863 5.70404 5.82539 5.85430 6.00479 6.08463 6.10152 6.14443 6.25778 6.62407 6.63819 6.90565 7.64356 7.71008 7.95983 8.22176 8.37699 8.98840 9.55995 11.07775 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.003277 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.329347 B = 8542.932346 C = 8733.510063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.095 0.905 4 O -0.358 6.358 5 C 0.457 3.543 6 O -0.503 6.503 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.055 4.055 18 C -0.102 4.102 19 C -0.092 4.092 20 C -0.154 4.154 21 C 0.096 3.904 22 F -0.140 7.140 23 C -0.144 4.144 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -8.580 20.000 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.066 3.934 3 H 0.113 0.887 4 O -0.276 6.276 5 C 0.301 3.699 6 O -0.390 6.390 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.055 4.055 18 C -0.120 4.120 19 C -0.110 4.110 20 C -0.173 4.173 21 C 0.077 3.923 22 F -0.119 7.119 23 C -0.162 4.162 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.678 -8.006 19.970 21.827 hybrid contribution 0.381 -0.041 -0.572 0.689 sum -3.296 -8.047 19.398 21.258 Atomic orbital electron populations 1.22160 0.93126 1.03290 1.03382 1.21295 0.94627 0.96531 0.80925 0.88726 1.86622 1.77652 1.43024 1.20309 1.24816 0.73703 0.86406 0.84955 1.90630 1.47613 1.16947 1.83763 1.21777 1.01754 1.01999 0.88503 1.19024 0.98566 0.92468 0.90375 1.21151 1.45127 0.94714 0.95723 0.92299 1.25022 0.95475 0.94814 0.99013 1.69992 1.48303 1.05017 1.29448 0.86541 0.78865 0.79085 0.83180 1.20599 1.21184 1.19775 1.19527 0.98296 0.94124 0.93589 1.21176 0.98407 0.93752 0.98699 1.21064 0.97576 1.00360 0.92036 1.21187 1.03486 0.92154 1.00426 1.17571 1.01292 0.89843 0.83612 1.91502 1.90380 1.78733 1.51292 1.20931 1.01969 1.01068 0.92273 0.91350 0.90849 0.91045 0.88931 0.88899 0.95574 0.95587 0.92831 0.84348 0.84713 0.84757 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.53 37.16 0.35 -1.50 16 2 C 0.12 1.62 2.77 -27.88 -0.08 1.54 16 3 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 4 O -0.36 -5.62 9.03 -39.27 -0.35 -5.97 16 5 C 0.46 8.74 7.93 36.01 0.29 9.03 16 6 O -0.50 -11.13 15.20 -18.75 -0.29 -11.41 16 7 C -0.10 -2.05 5.75 -27.88 -0.16 -2.21 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.74 16 9 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 13 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.06 -0.64 5.01 -104.63 -0.52 -1.16 16 18 C -0.10 -1.06 9.35 -39.58 -0.37 -1.43 16 19 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 20 C -0.15 -1.39 10.03 -39.51 -0.40 -1.79 16 21 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 22 F -0.14 -1.58 17.27 2.25 0.04 -1.55 16 23 C -0.14 -1.57 9.66 -39.51 -0.38 -1.96 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.14 1.37 7.63 -52.48 -0.40 0.97 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -31.64 313.67 -7.18 -38.81 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.53 Total: -2.18 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.49 Total: -12.59 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.64 Total: -17.38 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.64 -7.18 -38.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291022614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.947 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds