Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47700 * 2 1 4 4 O 1.45206 * 109.47340 * 239.99893 * 2 1 3 5 5 C 1.34236 * 116.99698 * 89.99840 * 4 2 1 6 6 O 1.20826 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99529 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.46670 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46755 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99607 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00252 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99730 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47128 * 90.00054 * 13 11 9 15 15 H 1.48502 * 109.46892 * 209.99945 * 13 11 9 16 16 H 1.48500 * 109.47099 * 329.99697 * 13 11 9 17 17 C 1.50699 * 109.47366 * 120.00273 * 2 1 3 18 18 C 1.38265 * 119.99210 * 84.97593 * 17 2 1 19 19 C 1.38223 * 120.05406 * 179.97438 * 18 17 2 20 20 C 1.38223 * 120.02411 * 0.02562 * 19 18 17 21 21 C 1.38437 * 119.97448 * 359.74760 * 20 19 18 22 22 F 1.35099 * 120.02356 * 180.27548 * 21 20 19 23 23 C 1.38183 * 119.98467 * 265.00326 * 17 2 1 24 24 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46816 * 300.00057 * 1 2 3 26 26 H 1.08998 * 109.47032 * 59.99881 * 1 2 3 27 27 H 1.09002 * 109.46934 * 299.99360 * 7 5 4 28 28 H 1.08991 * 109.47499 * 59.99718 * 7 5 4 29 29 H 1.09002 * 109.46661 * 299.99210 * 8 7 5 30 30 H 1.08996 * 109.47204 * 59.99414 * 8 7 5 31 31 H 0.97003 * 120.00077 * 179.97438 * 12 11 9 32 32 H 1.08004 * 119.96758 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98736 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.01045 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01017 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2812 6 8 1.9982 1.2519 -2.2504 7 6 2.7183 -0.5772 -3.5495 8 6 2.8636 0.4891 -4.6371 9 6 3.3654 -0.1521 -5.9053 10 1 3.5614 -1.2138 -5.9327 11 6 3.5741 0.6168 -7.0306 12 7 3.3348 1.9096 -6.9974 13 14 4.1953 -0.1780 -8.6028 14 1 3.0399 -0.6215 -9.4233 15 1 4.9992 0.8064 -9.3709 16 1 5.0410 -1.3508 -8.2639 17 6 2.0324 -0.7104 1.2304 18 6 2.1639 -2.0868 1.2285 19 6 2.6251 -2.7397 2.3561 20 6 2.9548 -2.0172 3.4874 21 6 2.8280 -0.6386 3.4889 22 9 3.1553 0.0691 4.5922 23 6 2.3609 0.0139 2.3604 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6873 -1.0408 -3.3640 28 1 2.0089 -1.3370 -3.8774 29 1 1.8948 0.9530 -4.8228 30 1 3.5732 1.2485 -4.3089 31 1 3.4821 2.4506 -7.7890 32 1 1.9061 -2.6522 0.3451 33 1 2.7278 -3.8148 2.3533 34 1 3.3156 -2.5275 4.3682 35 1 2.2580 1.0890 2.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291022614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -142.314556 kcal Electronic energy + Delta-G solvation = -19109.993112 eV Core-core repulsion = 15793.250722 eV Total energy + Delta-G solvation = -3316.742391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.93906 -41.71468 -40.08762 -37.74040 -35.64301 -34.18355 -33.02405 -31.59180 -30.35485 -28.09569 -25.52437 -24.16309 -23.73789 -22.17511 -21.24818 -19.13710 -18.72846 -18.08338 -17.34243 -17.17615 -17.05858 -16.80969 -16.62810 -16.45256 -15.35931 -15.21000 -14.73552 -14.47300 -14.27151 -14.11318 -14.01159 -13.39247 -13.22419 -13.09722 -12.83042 -12.69658 -12.62604 -12.49658 -12.00747 -11.92573 -11.73638 -11.70589 -11.42093 -11.25368 -10.57175 -10.03200 -9.71275 -8.19435 -6.33207 0.07063 0.16790 1.23993 1.43974 1.46413 1.57071 1.65543 2.43588 2.56163 3.14222 3.14551 3.48445 3.76614 3.82273 4.02453 4.04802 4.09061 4.23223 4.38210 4.42412 4.46601 4.62920 4.69033 4.83350 4.92882 5.03613 5.09015 5.10534 5.29394 5.34345 5.46979 5.54960 5.55997 5.81305 5.87152 6.13691 6.78946 6.86997 7.37199 8.93170 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.003277 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.329347 B = 8542.932346 C = 8733.510063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 O -0.345 6.345 5 C 0.466 3.534 6 O -0.542 6.542 7 C -0.093 4.093 8 C 0.038 3.962 9 C -0.544 4.544 10 H 0.078 0.922 11 C -0.005 4.005 12 N -0.936 5.936 13 Si 0.974 3.026 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.255 1.255 17 C -0.069 4.069 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.147 4.147 21 C 0.080 3.920 22 F -0.147 7.147 23 C -0.152 4.152 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.119 0.881 29 H -0.010 1.010 30 H -0.012 1.012 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -11.618 20.657 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.095 0.905 4 O -0.262 6.262 5 C 0.312 3.688 6 O -0.432 6.432 7 C -0.131 4.131 8 C 0.000 4.000 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.202 4.202 12 N -0.576 5.576 13 Si 0.798 3.202 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.179 1.179 17 C -0.069 4.069 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.165 4.165 21 C 0.061 3.939 22 F -0.126 7.126 23 C -0.171 4.171 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.303 -11.081 20.658 23.674 hybrid contribution 0.246 0.897 -0.649 1.134 sum -3.057 -10.184 20.009 22.659 Atomic orbital electron populations 1.22149 0.91662 1.04265 1.03408 1.21508 0.95884 0.95804 0.80534 0.90503 1.86564 1.77181 1.42272 1.20188 1.24527 0.72945 0.85729 0.85644 1.90626 1.49412 1.18617 1.84522 1.21522 1.03870 1.00341 0.87329 1.18805 0.95463 0.93233 0.92454 1.21651 1.44524 0.95713 0.96236 0.90349 1.26101 0.95625 0.95270 1.03240 1.70161 1.49814 1.06962 1.30663 0.85316 0.78494 0.78326 0.78097 1.19691 1.21288 1.17899 1.19373 1.00003 0.94809 0.92763 1.21354 0.98390 0.93144 0.99717 1.21405 0.95937 1.01912 0.90878 1.21531 1.02133 0.91394 1.01471 1.17770 1.02023 0.90704 0.83359 1.91485 1.90526 1.79055 1.51517 1.20981 1.02285 1.01355 0.92511 0.89843 0.88855 0.92969 0.86676 0.86339 0.99124 0.99323 0.92784 0.83791 0.81434 0.82286 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.53 71.98 0.69 -2.84 16 2 C 0.12 3.11 2.77 29.85 0.08 3.19 16 3 H 0.08 2.32 7.06 -2.39 -0.02 2.30 16 4 O -0.34 -10.59 9.03 -51.47 -0.46 -11.05 16 5 C 0.47 17.98 7.93 71.24 0.56 18.55 16 6 O -0.54 -25.03 15.20 21.96 0.33 -24.70 16 7 C -0.09 -3.68 5.75 29.85 0.17 -3.51 16 8 C 0.04 2.03 4.26 29.85 0.13 2.15 16 9 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 10 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 11 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 12 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 13 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 17 C -0.07 -1.53 5.01 -19.87 -0.10 -1.63 16 18 C -0.11 -1.98 9.35 22.27 0.21 -1.77 16 19 C -0.08 -1.16 10.04 22.26 0.22 -0.93 16 20 C -0.15 -2.23 10.03 22.31 0.22 -2.00 16 21 C 0.08 1.60 7.30 22.38 0.16 1.77 16 22 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 23 C -0.15 -3.25 9.66 22.31 0.22 -3.03 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 28 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 29 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 30 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.14 2.45 7.63 -2.91 -0.02 2.42 16 33 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -70.31 313.67 7.30 -63.00 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.08 Total: 7.20 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.26 Total: -19.69 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.28 Total: -57.78 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.13 Total: -35.75 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.31 7.30 -63.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291022614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.310 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds