Wall clock time and date at job start Mon Mar 30 2020 00:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34218 * 109.12177 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90797 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79904 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39826 * 359.75015 * 5 4 3 8 8 C 1.47381 * 127.19104 * 180.26443 * 7 5 4 9 9 O 1.21616 * 120.00100 * 270.12959 * 8 7 5 10 10 N 1.34779 * 120.00123 * 90.13250 * 8 7 5 11 11 C 1.46500 * 120.00175 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46953 * 180.02562 * 11 10 8 13 13 O 1.21295 * 120.00259 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99888 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00252 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99844 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00157 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99865 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47625 * 60.00275 * 19 17 15 21 21 H 1.48503 * 109.47193 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47124 * 299.99979 * 19 17 15 23 23 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 26 26 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 27 27 H 1.08992 * 109.47638 * 359.97398 * 6 5 4 28 28 H 1.09008 * 109.47068 * 119.97369 * 6 5 4 29 29 H 1.09005 * 109.47179 * 239.96908 * 6 5 4 30 30 H 0.97000 * 119.99607 * 359.97438 * 10 8 7 31 31 H 1.08995 * 109.46863 * 300.00120 * 11 10 8 32 32 H 1.08998 * 109.46617 * 59.99915 * 11 10 8 33 33 H 0.97003 * 119.99971 * 359.97438 * 14 12 11 34 34 H 0.97003 * 119.99926 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6758 0.0015 6 6 4.9292 -1.4920 0.0029 7 6 2.3923 -1.1737 0.0072 8 6 1.9914 -2.5920 0.0156 9 8 1.8257 -3.1833 -1.0341 10 7 1.8084 -3.2336 1.1866 11 6 1.4094 -4.6432 1.1950 12 6 1.2726 -5.1181 2.6186 13 8 1.4877 -4.3544 3.5360 14 7 0.9122 -6.3917 2.8724 15 6 0.7882 -6.8240 4.1676 16 1 0.9790 -6.1437 4.9845 17 6 0.4162 -8.1369 4.4292 18 7 0.1836 -8.9644 3.4353 19 14 0.2466 -8.7255 6.1939 20 1 -0.7852 -7.9150 6.8892 21 1 -0.1573 -10.1546 6.2024 22 1 1.5481 -8.5753 6.8930 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8903 0.5134 25 1 -0.3633 -0.8898 0.5143 26 1 1.9895 2.1011 -0.0004 27 1 5.7912 -0.8249 0.0026 28 1 4.9560 -2.1198 0.8936 29 1 4.9567 -2.1217 -0.8864 30 1 1.9409 -2.7621 2.0239 31 1 0.4539 -4.7534 0.6822 32 1 2.1665 -5.2381 0.6842 33 1 0.7405 -7.0026 2.1387 34 1 -0.0758 -9.8811 3.6180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344190057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:23 Heat of formation + Delta-G solvation = -70.426879 kcal Electronic energy + Delta-G solvation = -19445.392751 eV Core-core repulsion = 16151.687606 eV Total energy + Delta-G solvation = -3293.705145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60399 -39.36434 -38.05213 -34.44709 -33.99284 -33.62740 -32.57302 -31.39387 -28.64161 -27.55984 -26.44476 -24.65290 -22.70379 -20.05275 -19.77195 -19.48148 -18.18897 -17.69958 -16.47488 -16.06778 -15.52496 -15.26833 -15.22096 -14.53839 -14.26370 -14.01977 -13.75347 -13.35381 -13.26435 -13.19607 -13.01105 -12.75292 -12.43857 -12.20668 -11.96593 -11.64622 -11.39520 -11.11305 -10.51735 -10.33230 -9.98724 -9.64109 -9.44879 -8.83515 -8.65597 -8.54108 -8.11741 -6.52769 -3.94930 1.55792 2.16657 2.68714 2.76817 3.12870 3.20765 3.23939 3.47451 3.72211 4.10505 4.38575 4.76706 4.85559 4.90213 5.07351 5.15509 5.18785 5.33309 5.48649 5.55737 5.58139 5.75925 5.83051 5.90108 5.93417 6.04861 6.07131 6.32980 6.63645 6.98523 7.44558 7.78414 7.90174 8.39524 8.44716 9.03069 9.37483 9.85470 10.64017 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034067 B = 0.003685 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.718792 B = 7597.145294 C = 7641.409121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.145 4.145 3 C -0.045 4.045 4 O -0.174 6.174 5 C 0.043 3.957 6 C -0.082 4.082 7 C -0.224 4.224 8 C 0.590 3.410 9 O -0.541 6.541 10 N -0.697 5.697 11 C 0.107 3.893 12 C 0.428 3.572 13 O -0.597 6.597 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.027 3.973 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.206 0.794 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.413 0.587 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 15.016 -6.959 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C -0.111 4.111 4 O -0.071 6.071 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.229 4.229 8 C 0.375 3.625 9 O -0.419 6.419 10 N -0.351 5.351 11 C -0.020 4.020 12 C 0.213 3.787 13 O -0.483 6.483 14 N -0.183 5.183 15 C -0.436 4.436 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.223 0.777 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.549 15.024 -7.068 17.215 hybrid contribution -0.431 -0.585 0.768 1.057 sum 4.118 14.439 -6.300 16.283 Atomic orbital electron populations 1.20209 0.88614 1.03052 1.02500 1.21360 0.96876 0.90553 1.05907 1.23571 0.79652 0.99428 1.08429 1.83709 1.29575 1.21896 1.71895 1.22519 0.96076 0.80736 1.01502 1.20470 0.90912 0.97820 1.04604 1.20999 0.93224 0.94003 1.14661 1.17240 0.76995 0.84645 0.83656 1.90788 1.51533 1.67758 1.31835 1.45729 1.68370 1.11864 1.09101 1.20998 1.01693 0.82179 0.97130 1.19715 0.85588 0.83954 0.89425 1.90504 1.57171 1.54844 1.45804 1.41786 1.58293 1.08985 1.09219 1.19685 1.44198 0.95683 0.83987 0.87720 1.25322 0.96645 0.95739 0.99935 1.69606 1.45774 1.06424 1.31664 0.85870 0.79041 0.77508 0.81536 1.19763 1.20837 1.19764 0.91019 0.91135 0.91159 0.77722 0.89951 0.88903 0.89024 0.74909 0.89727 0.89676 0.77018 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.38 36.01 0.37 -0.57 16 2 C -0.15 -1.85 6.38 -102.49 -0.65 -2.50 16 3 C -0.04 -0.47 11.96 29.30 0.35 -0.12 16 4 O -0.17 -2.10 10.52 7.65 0.08 -2.02 16 5 C 0.04 0.56 7.37 -34.96 -0.26 0.30 16 6 C -0.08 -0.82 10.17 36.01 0.37 -0.45 16 7 C -0.22 -3.34 6.07 -103.28 -0.63 -3.96 16 8 C 0.59 10.15 7.41 -12.54 -0.09 10.05 16 9 O -0.54 -10.85 17.11 5.26 0.09 -10.76 16 10 N -0.70 -12.13 5.52 -62.58 -0.35 -12.47 16 11 C 0.11 1.99 6.15 -5.20 -0.03 1.96 16 12 C 0.43 9.78 7.85 -10.99 -0.09 9.70 16 13 O -0.60 -15.28 15.24 5.54 0.08 -15.20 16 14 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 15 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 16 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.89 -23.75 13.05 55.50 0.72 -23.03 16 19 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.41 7.22 7.42 -40.82 -0.30 6.92 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -32.23 310.53 -4.61 -36.84 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -3.94 Total: 13.55 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.90 Total: 6.58 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.32 Total: -49.08 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: 0.26 Total: -27.97 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.23 -4.61 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344190057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.586 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds