Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99960 * 2 1 4 4 C 1.38763 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94022 * 180.02562 * 4 3 2 6 6 N 1.48003 * 119.96978 * 180.02562 * 5 4 3 7 7 O 1.21804 * 119.99842 * 0.02562 * 6 5 4 8 8 O 1.21797 * 120.00183 * 179.97438 * 6 5 4 9 9 C 1.38288 * 120.05999 * 359.97438 * 5 4 3 10 10 C 1.38247 * 120.11173 * 359.72687 * 9 5 4 11 11 C 1.38172 * 120.05331 * 0.54901 * 10 9 5 12 12 C 1.50691 * 120.02808 * 179.72626 * 11 10 9 13 13 N 1.46500 * 109.47278 * 259.72706 * 12 11 10 14 14 C 1.46505 * 119.99723 * 270.00121 * 13 12 11 15 15 C 1.36934 * 120.00222 * 89.99562 * 13 12 11 16 16 H 1.08001 * 119.99708 * 20.38507 * 15 13 12 17 17 C 1.38810 * 120.00121 * 200.37607 * 15 13 12 18 18 N 1.31616 * 120.00152 * 14.97516 * 17 15 13 19 19 Si 1.86798 * 120.00150 * 194.97028 * 17 15 13 20 20 H 1.48499 * 109.47113 * 85.00379 * 19 17 15 21 21 H 1.48501 * 109.47636 * 205.00645 * 19 17 15 22 22 H 1.48502 * 109.47127 * 325.00520 * 19 17 15 23 23 H 1.09000 * 109.47394 * 299.99719 * 1 2 3 24 24 H 1.09001 * 109.46920 * 60.00600 * 1 2 3 25 25 H 1.09004 * 109.46604 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.02674 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.94376 * 180.02562 * 9 5 4 28 28 H 1.08001 * 119.97409 * 180.27424 * 10 9 5 29 29 H 1.08997 * 109.47278 * 139.72802 * 12 11 10 30 30 H 1.08997 * 109.47624 * 19.72532 * 12 11 10 31 31 H 1.09000 * 109.46785 * 95.08354 * 14 13 12 32 32 H 1.09004 * 109.46999 * 215.07847 * 14 13 12 33 33 H 1.08997 * 109.47299 * 335.08034 * 14 13 12 34 34 H 0.96999 * 120.00920 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.1000 4.7851 -0.0001 8 8 1.6709 5.9316 -0.0011 9 6 3.3018 3.6758 -0.0005 10 6 4.0559 2.5172 0.0062 11 6 3.4311 1.2848 0.0010 12 6 4.2537 0.0223 0.0022 13 7 4.3200 -0.5187 -1.3577 14 6 3.3061 -1.4711 -1.8173 15 6 5.3295 -0.1341 -2.1992 16 1 6.2384 0.2866 -1.7951 17 6 5.1846 -0.2851 -3.5714 18 7 3.9951 -0.5133 -4.0864 19 14 6.6779 -0.1643 -4.6871 20 1 7.3522 -1.4855 -4.7565 21 1 6.2471 0.2437 -6.0485 22 1 7.6217 0.8452 -4.1434 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2127 2.3203 -0.0014 27 1 3.7921 4.6382 -0.0005 28 1 5.1344 2.5753 0.0111 29 1 3.7922 -0.7115 0.6630 30 1 5.2610 0.2451 0.3539 31 1 2.5195 -0.9359 -2.3492 32 1 3.7671 -2.1980 -2.4861 33 1 2.8774 -1.9880 -0.9587 34 1 3.8937 -0.6185 -5.0454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430211683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = 11.017828 kcal Electronic energy + Delta-G solvation = -20461.499662 eV Core-core repulsion = 17171.326225 eV Total energy + Delta-G solvation = -3290.173438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78196 -40.00005 -37.31464 -36.18028 -35.82722 -32.58184 -30.82077 -30.09649 -27.51422 -27.24700 -26.09684 -24.59321 -22.23513 -22.05368 -20.65873 -19.25680 -18.36647 -17.16381 -17.00615 -16.57211 -15.82035 -15.66152 -15.62756 -14.82199 -13.96594 -13.79572 -13.62397 -13.36294 -12.68029 -12.47022 -11.88035 -11.73513 -11.40711 -11.27058 -11.14021 -11.07705 -11.06867 -10.83027 -10.82083 -10.67744 -10.45848 -10.23566 -10.17628 -8.94673 -8.84204 -8.14665 -7.11756 -6.07381 -3.37213 0.18834 1.47428 1.80469 1.85215 3.21851 3.27902 3.29425 3.43033 3.73814 4.25420 4.79473 4.93529 5.05685 5.10175 5.21542 5.28355 5.34572 5.43770 5.56795 5.65215 5.76233 5.93705 6.07589 6.30026 6.38416 6.61572 6.66413 6.70632 6.88216 7.18117 7.47656 7.50272 7.58872 8.03531 8.05228 8.87567 9.49263 9.97395 10.94112 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.006358 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.682991 B = 4402.810326 C = 5083.086821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.138 3.862 4 C -0.158 4.158 5 C -0.042 4.042 6 N 0.043 4.957 7 O -0.190 6.190 8 O -0.184 6.184 9 C -0.082 4.082 10 C -0.086 4.086 11 C -0.064 4.064 12 C 0.178 3.822 13 N -0.571 5.571 14 C 0.163 3.837 15 C -0.248 4.248 16 H 0.079 0.921 17 C 0.002 3.998 18 N -0.884 5.884 19 Si 0.913 3.087 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.010 0.990 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 0.916 8.534 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.207 6.207 3 C 0.090 3.910 4 C -0.179 4.179 5 C -0.128 4.128 6 N 0.554 4.446 7 O -0.400 6.400 8 O -0.395 6.395 9 C -0.102 4.102 10 C -0.107 4.107 11 C -0.072 4.072 12 C 0.052 3.948 13 N -0.288 5.288 14 C 0.018 3.982 15 C -0.377 4.377 16 H 0.096 0.904 17 C -0.199 4.199 18 N -0.526 5.526 19 Si 0.742 3.258 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.897 0.001 8.278 8.770 hybrid contribution -0.022 0.828 -1.015 1.310 sum -2.920 0.829 7.263 7.871 Atomic orbital electron populations 1.23078 0.78850 1.04014 1.01154 1.86213 1.20808 1.25323 1.88309 1.18475 0.91654 0.83505 0.97345 1.20743 1.01248 0.90119 1.05785 1.20449 0.91231 0.83157 1.17915 1.43613 1.01170 1.02854 0.96996 1.94465 0.96425 1.94194 1.54885 1.94472 1.74280 1.16157 1.54556 1.20839 0.90420 1.00747 0.98181 1.20781 1.00331 0.89631 0.99955 1.21045 0.91356 0.99050 0.95759 1.20120 0.96570 0.89352 0.88806 1.44611 1.28925 1.44402 1.10894 1.20898 0.91328 0.91234 0.94700 1.19496 0.93063 1.37715 0.87450 0.90362 1.25185 0.96942 1.00566 0.97231 1.70098 1.20758 1.49752 1.11965 0.86132 0.81638 0.78240 0.79800 1.20930 1.21433 1.20101 0.92942 0.92606 0.88075 0.83743 0.83945 0.83726 0.92083 0.91897 0.94933 0.93652 0.97132 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.29 -4.87 8.46 -19.42 -0.16 -5.04 16 3 C 0.14 2.43 6.66 -39.21 -0.26 2.17 16 4 C -0.16 -2.69 8.54 -39.43 -0.34 -3.03 16 5 C -0.04 -0.74 6.85 -79.98 -0.55 -1.29 16 6 N 0.04 0.80 4.45 33.95 0.15 0.95 16 7 O -0.19 -3.56 18.45 -29.46 -0.54 -4.10 16 8 O -0.18 -3.42 18.45 -29.46 -0.54 -3.97 16 9 C -0.08 -1.34 9.55 -39.56 -0.38 -1.72 16 10 C -0.09 -1.42 9.67 -39.60 -0.38 -1.80 16 11 C -0.06 -1.16 5.48 -104.48 -0.57 -1.74 16 12 C 0.18 3.31 5.51 -5.20 -0.03 3.29 16 13 N -0.57 -13.10 2.91 -182.51 -0.53 -13.63 16 14 C 0.16 3.73 7.97 59.85 0.48 4.20 16 15 C -0.25 -6.18 9.68 -15.06 -0.15 -6.32 16 16 H 0.08 1.86 7.86 -52.49 -0.41 1.45 16 17 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 18 N -0.88 -24.13 10.67 55.49 0.59 -23.53 16 19 Si 0.91 20.37 29.58 -169.99 -5.03 15.34 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.14 2.22 5.85 -52.49 -0.31 1.91 16 27 H 0.14 2.06 7.61 -52.49 -0.40 1.66 16 28 H 0.15 2.08 8.03 -52.49 -0.42 1.65 16 29 H 0.06 1.06 7.57 -51.93 -0.39 0.66 16 30 H 0.06 1.07 7.89 -51.93 -0.41 0.66 16 31 H 0.03 0.82 7.40 -51.93 -0.38 0.44 16 32 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 33 H 0.01 0.21 7.63 -51.93 -0.40 -0.19 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -28.88 297.89 -6.70 -35.58 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.85 Total: -1.11 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.27 Total: -4.99 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.21 Total: -36.21 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.25 Total: -13.11 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.88 -6.70 -35.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430211683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.596 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds