Wall clock time and date at job start Mon Mar 30 2020 00:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00182 * 2 1 4 4 C 1.50707 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.38303 * 119.92282 * 89.99136 * 4 3 2 6 6 C 1.38075 * 120.07684 * 179.74435 * 5 4 3 7 7 C 1.38971 * 119.92587 * 0.26224 * 6 5 4 8 8 S 1.76195 * 120.08520 * 179.97438 * 7 6 5 9 9 C 1.81401 * 103.00148 * 95.20413 * 8 7 6 10 10 H 1.09005 * 109.47129 * 52.59470 * 9 8 7 11 11 C 1.52998 * 109.47273 * 292.60159 * 9 8 7 12 12 C 1.52998 * 109.47242 * 172.59469 * 9 8 7 13 13 C 1.50695 * 109.47180 * 295.00190 * 12 9 8 14 14 H 1.08002 * 120.00389 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99902 * 180.02562 * 13 12 9 16 16 N 1.31515 * 120.00169 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47167 * 60.00023 * 17 15 13 19 19 H 1.48505 * 109.47205 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47614 * 299.99980 * 17 15 13 21 21 C 1.38977 * 119.83719 * 359.97438 * 7 6 5 22 22 C 1.38082 * 119.92071 * 359.97438 * 21 7 6 23 23 H 1.08998 * 109.46915 * 60.00546 * 1 2 3 24 24 H 1.09005 * 109.47475 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47187 * 300.00561 * 1 2 3 26 26 H 1.08998 * 109.47751 * 59.99707 * 3 2 1 27 27 H 1.08999 * 109.47029 * 299.99438 * 3 2 1 28 28 H 1.07995 * 119.95934 * 0.03144 * 5 4 3 29 29 H 1.08002 * 120.03567 * 180.23398 * 6 5 4 30 30 H 1.09001 * 109.47042 * 305.92621 * 11 9 8 31 31 H 1.08990 * 109.47732 * 65.92771 * 11 9 8 32 32 H 1.08997 * 109.47071 * 185.93691 * 11 9 8 33 33 H 1.08997 * 109.47165 * 55.00195 * 12 9 8 34 34 H 1.09003 * 109.46846 * 175.00070 * 12 9 8 35 35 H 0.96991 * 120.00074 * 180.02562 * 16 15 13 36 36 H 1.08007 * 120.03957 * 180.02562 * 21 7 6 37 37 H 1.07992 * 119.96335 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1998 1.1319 -1.1996 6 6 5.5767 1.0281 -1.2039 7 6 6.2715 0.9730 -0.0016 8 16 8.0284 0.8399 -0.0022 9 6 8.5683 2.5639 0.1617 10 1 8.0751 3.0190 1.0206 11 6 8.1998 3.3366 -1.1064 12 6 10.0845 2.6067 0.3626 13 6 10.4361 1.9524 1.6737 14 1 9.6563 1.5462 2.3009 15 6 11.7535 1.8722 2.0727 16 7 12.7031 2.3672 1.3093 17 14 12.1894 1.0618 3.6983 18 1 11.7318 -0.3509 3.6856 19 1 13.6610 1.1032 3.8932 20 1 11.5220 1.7882 4.8083 21 6 5.5772 1.0230 1.2012 22 6 4.2004 1.1278 1.1979 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8462 -0.8900 28 1 3.6593 1.1752 -2.1335 29 1 6.1129 0.9895 -2.1406 30 1 8.6062 2.8213 -1.9768 31 1 7.1150 3.3962 -1.1932 32 1 8.6160 4.3425 -1.0528 33 1 10.5741 2.0735 -0.4524 34 1 10.4206 3.6435 0.3722 35 1 13.6299 2.3105 1.5898 36 1 6.1140 0.9807 2.1375 37 1 3.6601 1.1663 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591128190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:50 Heat of formation + Delta-G solvation = -36.952774 kcal Electronic energy + Delta-G solvation = -17139.694105 eV Core-core repulsion = 14393.733720 eV Total energy + Delta-G solvation = -2745.960385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.34575 -37.66106 -34.50014 -32.20658 -31.84361 -30.92754 -27.64694 -27.27849 -25.50021 -23.29653 -22.61583 -21.57445 -20.43341 -17.33019 -16.63905 -16.31628 -16.17663 -16.02788 -15.01171 -14.73778 -14.50568 -14.39296 -13.45739 -13.37078 -13.18341 -12.64423 -12.55942 -12.41150 -11.93099 -11.81317 -11.57358 -11.40129 -11.06378 -10.83693 -10.73693 -10.51037 -10.23160 -9.98784 -9.72637 -9.37907 -9.14181 -8.85924 -8.46154 -8.25363 -6.95333 -5.98601 -3.99551 1.04632 1.48504 2.40386 3.24328 3.37532 3.41157 3.45016 3.63536 4.05104 4.49362 4.69944 4.71308 5.00530 5.01504 5.02810 5.14839 5.17551 5.35480 5.38738 5.53020 5.65544 5.71077 5.79757 5.83239 6.04093 6.08096 6.31251 6.40379 6.53323 6.55944 6.62525 6.73784 6.84184 6.96130 7.53914 7.64286 7.98895 8.37166 9.04860 9.63839 11.12874 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.003872 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.107661 B = 7229.572472 C = 7767.774851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.103 3.897 4 C -0.086 4.086 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.102 4.102 8 S -0.139 6.139 9 C -0.049 4.049 10 H 0.074 0.926 11 C -0.144 4.144 12 C 0.040 3.960 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.080 4.080 22 C -0.107 4.107 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.133 0.867 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.516 -0.630 -4.125 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.101 4.101 7 C -0.213 4.213 8 S 0.095 5.905 9 C -0.177 4.177 10 H 0.092 0.908 11 C -0.203 4.203 12 C 0.001 3.999 13 C -0.553 4.553 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.100 4.100 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.515 -1.699 -4.208 21.011 hybrid contribution -0.724 0.882 1.018 1.529 sum -21.239 -0.817 -3.190 21.493 Atomic orbital electron populations 1.22758 0.81117 1.02841 0.99929 1.88000 1.19478 1.27483 1.95380 1.21358 0.90075 0.85028 1.00807 1.19604 0.93657 1.01561 0.93778 1.21014 0.94167 1.00478 0.97269 1.21611 0.93687 0.97043 0.97774 1.22278 1.00201 1.03781 0.94997 1.85968 0.93014 1.15217 1.96312 1.23565 1.04038 0.91163 0.98917 0.90769 1.22126 0.99869 1.00370 0.97929 1.19020 0.84813 0.98091 0.97931 1.21213 0.92467 1.37381 1.04287 0.91892 1.24987 0.96533 0.95592 0.97206 1.69944 1.00182 1.46061 1.37525 0.86644 0.77043 0.80247 0.84051 1.20030 1.21425 1.20290 1.21691 0.93732 0.96518 0.98076 1.21041 0.94169 1.00182 0.97341 0.94075 0.89555 0.94057 0.92417 0.92456 0.85986 0.85178 0.91967 0.93946 0.92177 0.95527 0.94846 0.92946 0.84930 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.32 10.69 -35.23 -0.38 -4.69 16 3 C 0.10 1.03 6.06 36.01 0.22 1.25 16 4 C -0.09 -1.07 5.51 -104.57 -0.58 -1.65 16 5 C -0.11 -1.39 9.69 -39.62 -0.38 -1.77 16 6 C -0.08 -1.17 9.46 -39.37 -0.37 -1.54 16 7 C -0.10 -1.70 5.32 -39.04 -0.21 -1.91 16 8 S -0.14 -2.79 20.40 -107.50 -2.19 -4.98 16 9 C -0.05 -1.01 2.73 -26.73 -0.07 -1.09 16 10 H 0.07 1.55 8.14 -51.92 -0.42 1.13 16 11 C -0.14 -2.48 9.06 37.16 0.34 -2.15 16 12 C 0.04 1.01 4.45 -27.89 -0.12 0.88 16 13 C -0.51 -14.36 8.53 -34.44 -0.29 -14.65 16 14 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.08 -1.23 9.79 -39.36 -0.39 -1.62 16 22 C -0.11 -1.42 9.69 -39.61 -0.38 -1.81 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.66 7.57 -51.93 -0.39 0.27 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -30.95 329.00 -8.97 -39.92 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.84 Total: -2.78 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -1.23 Total: -23.17 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.19 Total: -4.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.95 -8.97 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.964 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds