Wall clock time and date at job start Mon Mar 30 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00182 * 2 1 4 4 C 1.50707 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.38303 * 119.92282 * 89.99136 * 4 3 2 6 6 C 1.38075 * 120.07684 * 179.74435 * 5 4 3 7 7 C 1.38971 * 119.92587 * 0.26224 * 6 5 4 8 8 S 1.76195 * 120.08520 * 179.97438 * 7 6 5 9 9 C 1.81401 * 103.00148 * 95.20413 * 8 7 6 10 10 H 1.09005 * 109.47129 * 52.59470 * 9 8 7 11 11 C 1.52998 * 109.47273 * 292.60159 * 9 8 7 12 12 C 1.52998 * 109.47242 * 172.59469 * 9 8 7 13 13 C 1.50695 * 109.47180 * 295.00190 * 12 9 8 14 14 H 1.08002 * 120.00389 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99902 * 180.02562 * 13 12 9 16 16 N 1.31515 * 120.00169 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47167 * 60.00023 * 17 15 13 19 19 H 1.48505 * 109.47205 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47614 * 299.99980 * 17 15 13 21 21 C 1.38977 * 119.83719 * 359.97438 * 7 6 5 22 22 C 1.38082 * 119.92071 * 359.97438 * 21 7 6 23 23 H 1.08998 * 109.46915 * 60.00546 * 1 2 3 24 24 H 1.09005 * 109.47475 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47187 * 300.00561 * 1 2 3 26 26 H 1.08998 * 109.47751 * 59.99707 * 3 2 1 27 27 H 1.08999 * 109.47029 * 299.99438 * 3 2 1 28 28 H 1.07995 * 119.95934 * 0.03144 * 5 4 3 29 29 H 1.08002 * 120.03567 * 180.23398 * 6 5 4 30 30 H 1.09001 * 109.47042 * 305.92621 * 11 9 8 31 31 H 1.08990 * 109.47732 * 65.92771 * 11 9 8 32 32 H 1.08997 * 109.47071 * 185.93691 * 11 9 8 33 33 H 1.08997 * 109.47165 * 55.00195 * 12 9 8 34 34 H 1.09003 * 109.46846 * 175.00070 * 12 9 8 35 35 H 0.96991 * 120.00074 * 180.02562 * 16 15 13 36 36 H 1.08007 * 120.03957 * 180.02562 * 21 7 6 37 37 H 1.07992 * 119.96335 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1998 1.1319 -1.1996 6 6 5.5767 1.0281 -1.2039 7 6 6.2715 0.9730 -0.0016 8 16 8.0284 0.8399 -0.0022 9 6 8.5683 2.5639 0.1617 10 1 8.0751 3.0190 1.0206 11 6 8.1998 3.3366 -1.1064 12 6 10.0845 2.6067 0.3626 13 6 10.4361 1.9524 1.6737 14 1 9.6563 1.5462 2.3009 15 6 11.7535 1.8722 2.0727 16 7 12.7031 2.3672 1.3093 17 14 12.1894 1.0618 3.6983 18 1 11.7318 -0.3509 3.6856 19 1 13.6610 1.1032 3.8932 20 1 11.5220 1.7882 4.8083 21 6 5.5772 1.0230 1.2012 22 6 4.2004 1.1278 1.1979 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8462 -0.8900 28 1 3.6593 1.1752 -2.1335 29 1 6.1129 0.9895 -2.1406 30 1 8.6062 2.8213 -1.9768 31 1 7.1150 3.3962 -1.1932 32 1 8.6160 4.3425 -1.0528 33 1 10.5741 2.0735 -0.4524 34 1 10.4206 3.6435 0.3722 35 1 13.6299 2.3105 1.5898 36 1 6.1140 0.9807 2.1375 37 1 3.6601 1.1663 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591128190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:49 Heat of formation + Delta-G solvation = -53.525942 kcal Electronic energy + Delta-G solvation = -17140.412771 eV Core-core repulsion = 14393.733720 eV Total energy + Delta-G solvation = -2746.679051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33631 -38.45005 -36.38848 -34.05123 -33.01300 -32.00207 -29.40177 -28.16005 -26.26018 -25.25119 -23.70824 -22.73766 -22.06238 -18.57111 -18.45399 -17.33288 -17.09475 -16.95021 -16.55010 -16.46593 -15.69297 -15.36208 -14.93419 -14.46106 -14.41014 -14.29728 -13.87312 -13.54947 -13.27330 -13.16729 -12.95050 -12.63049 -12.54494 -12.37825 -12.27864 -12.08161 -11.80952 -11.46498 -11.25512 -10.95173 -10.64248 -10.55252 -9.93488 -9.63144 -8.54785 -8.18117 -6.25867 -0.09619 0.41013 0.97786 1.40270 1.43634 1.50901 1.88780 2.42890 2.58283 3.16662 3.17620 3.81238 3.90008 4.04144 4.09470 4.23080 4.26669 4.39031 4.46972 4.53835 4.56992 4.58845 4.67388 4.76940 4.88422 4.89388 4.99747 5.05121 5.17975 5.25550 5.39066 5.42979 5.52164 5.53916 5.79410 5.90099 6.21497 6.21931 6.85790 7.41314 8.93711 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.003872 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.107661 B = 7229.572472 C = 7767.774851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.103 3.897 4 C -0.081 4.081 5 C -0.105 4.105 6 C -0.084 4.084 7 C -0.116 4.116 8 S -0.183 6.183 9 C -0.041 4.041 10 H 0.068 0.932 11 C -0.133 4.133 12 C 0.047 3.953 13 C -0.527 4.527 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.095 4.095 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 33 H -0.001 1.001 34 H 0.013 0.987 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.456 -0.699 -3.957 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.027 3.973 4 C -0.082 4.082 5 C -0.125 4.125 6 C -0.105 4.105 7 C -0.228 4.228 8 S 0.051 5.949 9 C -0.169 4.169 10 H 0.087 0.913 11 C -0.192 4.192 12 C 0.009 3.991 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.115 4.115 22 C -0.127 4.127 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.467 -1.762 -4.039 23.877 hybrid contribution 0.019 0.877 0.934 1.282 sum -23.448 -0.884 -3.105 23.669 Atomic orbital electron populations 1.22950 0.79179 1.03796 1.01202 1.87943 1.21629 1.28087 1.95669 1.21433 0.88033 0.85097 1.02710 1.20016 0.95500 0.99376 0.93270 1.21336 0.93292 0.99073 0.98766 1.21712 0.94692 0.96954 0.97140 1.22053 0.97170 1.06962 0.96565 1.85961 0.97526 1.14961 1.96478 1.23303 1.00592 0.92435 1.00522 0.91338 1.22016 1.01250 0.99951 0.95989 1.18813 0.88154 0.96080 0.96088 1.21549 0.92658 1.37148 1.05126 0.91999 1.25861 0.96539 0.96247 1.00850 1.70068 1.00519 1.47427 1.39418 0.85600 0.76946 0.79262 0.79890 1.19636 1.20875 1.19082 1.21703 0.94943 0.97551 0.97352 1.21279 0.93121 0.99323 0.98928 0.92668 0.88895 0.92880 0.90785 0.90376 0.83046 0.84514 0.91898 0.91791 0.91609 0.98301 0.96885 0.92845 0.85841 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.93 10.69 -148.98 -1.59 -9.52 16 3 C 0.10 1.66 6.06 71.24 0.43 2.09 16 4 C -0.08 -1.78 5.51 -19.83 -0.11 -1.89 16 5 C -0.11 -2.34 9.69 22.25 0.22 -2.13 16 6 C -0.08 -2.32 9.46 22.41 0.21 -2.11 16 7 C -0.12 -3.84 5.32 22.62 0.12 -3.72 16 8 S -0.18 -7.53 20.40 -56.49 -1.15 -8.68 16 9 C -0.04 -1.73 2.73 30.59 0.08 -1.64 16 10 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 11 C -0.13 -4.57 9.06 71.98 0.65 -3.92 16 12 C 0.05 2.47 4.45 29.85 0.13 2.61 16 13 C -0.53 -30.18 8.53 25.60 0.22 -29.96 16 14 H 0.06 3.48 7.60 -2.91 -0.02 3.46 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 17 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.09 -2.88 9.79 22.41 0.22 -2.66 16 22 C -0.11 -2.59 9.69 22.25 0.22 -2.38 16 23 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 27 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.91 7.57 -2.39 -0.02 1.89 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -67.90 329.00 4.69 -63.21 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.02 Total: 8.09 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 4.10 Total: -43.57 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.28 Total: -56.99 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.59 Total: -9.52 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.15 Total: -8.68 kcal Total: -67.90 4.69 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -67.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds