Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47884 * 2 1 4 4 C 1.50700 * 109.46952 * 120.00127 * 2 1 3 5 5 H 1.07998 * 120.00206 * 119.99362 * 4 2 1 6 6 C 1.37875 * 119.99898 * 299.99899 * 4 2 1 7 7 N 1.31516 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47244 * 89.99828 * 8 6 4 10 10 H 1.48500 * 109.47406 * 209.99701 * 8 6 4 11 11 H 1.48499 * 109.47140 * 329.99997 * 8 6 4 12 12 O 1.45204 * 109.46931 * 239.99455 * 2 1 3 13 13 C 1.34734 * 116.99359 * 90.00389 * 12 2 1 14 14 O 1.21485 * 120.00523 * 0.02562 * 13 12 2 15 15 C 1.47594 * 119.99404 * 179.97438 * 13 12 2 16 16 C 1.41345 * 125.95479 * 180.02562 * 15 13 12 17 17 C 1.34840 * 107.70313 * 179.97438 * 16 15 13 18 18 N 1.36409 * 107.93830 * 0.09520 * 17 16 15 19 19 N 1.32157 * 125.96360 * 359.97438 * 15 13 12 20 20 C 1.46717 * 123.62268 * 179.80569 * 18 17 16 21 21 C 1.53528 * 107.96475 * 343.06995 * 20 18 17 22 22 C 1.53235 * 109.30294 * 47.26953 * 21 20 18 23 23 O 1.36030 * 128.62178 * 180.22034 * 17 16 15 24 24 H 1.08991 * 109.47449 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46957 * 300.00163 * 1 2 3 26 26 H 1.09007 * 109.46660 * 59.99460 * 1 2 3 27 27 H 0.96997 * 119.99647 * 180.02562 * 7 6 4 28 28 H 1.08002 * 126.14566 * 359.68286 * 16 15 13 29 29 H 1.09010 * 109.76150 * 102.68213 * 20 18 17 30 30 H 1.08999 * 109.76616 * 223.39973 * 20 18 17 31 31 H 1.09000 * 109.50103 * 167.21537 * 21 20 18 32 32 H 1.08997 * 109.49784 * 287.32546 * 21 20 18 33 33 H 1.08994 * 109.50550 * 55.34256 * 22 21 20 34 34 H 1.09001 * 109.50021 * 175.46108 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5461 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7120 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0667 -2.2852 14 8 1.9979 1.2611 -2.2543 15 6 2.7097 -0.5612 -3.5271 16 6 2.9666 0.1035 -4.7477 17 6 3.4011 -0.8169 -5.6322 18 7 3.4203 -2.0274 -5.0037 19 7 2.9876 -1.8428 -3.6914 20 6 3.8361 -3.2746 -5.6551 21 6 3.8086 -3.0478 -7.1733 22 6 4.5135 -1.7272 -7.5010 23 8 3.7720 -0.6396 -6.9289 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.7096 1.1618 3.4843 28 1 2.8338 1.1581 -4.9391 29 1 4.8463 -3.5361 -5.3398 30 1 3.1477 -4.0767 -5.3890 31 1 4.3230 -3.8685 -7.6732 32 1 2.7748 -3.0031 -7.5158 33 1 5.5209 -1.7394 -7.0851 34 1 4.5671 -1.6020 -8.5825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763979172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -39.512192 kcal Electronic energy + Delta-G solvation = -19787.871667 eV Core-core repulsion = 16495.507083 eV Total energy + Delta-G solvation = -3292.364584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84295 -39.41143 -38.42342 -35.65534 -34.89337 -33.20161 -31.19371 -29.56955 -29.42058 -26.80394 -25.26455 -24.35199 -23.06622 -21.00089 -20.11954 -19.48008 -18.22898 -16.89712 -16.60910 -16.29984 -15.96127 -15.28196 -15.17584 -15.07342 -14.82223 -14.40274 -14.23064 -13.51593 -12.89668 -12.75276 -12.26232 -11.97009 -11.78926 -11.65656 -11.53011 -11.17542 -11.01548 -10.81604 -10.73737 -10.31251 -10.23579 -9.87104 -9.49841 -9.19395 -8.84903 -8.49022 -8.43720 -6.12885 -4.19065 1.44450 2.02889 2.17572 2.73763 3.29457 3.34384 3.38946 3.63371 3.69549 3.85679 4.02525 4.36624 4.41150 4.48125 4.78429 4.86713 5.00506 5.12431 5.20308 5.32908 5.34525 5.74334 5.86099 5.93506 6.41737 6.69521 6.95529 6.96723 7.10519 7.17228 7.42509 7.64387 7.77354 7.96604 8.18748 8.66027 8.93250 9.45727 10.94797 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004048 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.009715 B = 6914.618709 C = 7366.067057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.050 0.950 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.338 6.338 13 C 0.539 3.461 14 O -0.502 6.502 15 C 0.076 3.924 16 C -0.225 4.225 17 C 0.256 3.744 18 N -0.398 5.398 19 N -0.212 5.212 20 C 0.128 3.872 21 C -0.175 4.175 22 C 0.049 3.951 23 O -0.286 6.286 24 H 0.038 0.962 25 H 0.100 0.900 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.168 0.832 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 -7.868 -20.284 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.252 6.252 13 C 0.379 3.621 14 O -0.389 6.389 15 C -0.090 4.090 16 C -0.254 4.254 17 C 0.091 3.909 18 N -0.197 5.197 19 N -0.042 5.042 20 C 0.007 3.993 21 C -0.213 4.213 22 C -0.026 4.026 23 O -0.193 6.193 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.185 0.815 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.403 -8.403 -19.759 22.406 hybrid contribution 0.309 0.158 0.349 0.492 sum 6.711 -8.245 -19.410 22.130 Atomic orbital electron populations 1.22172 0.97358 1.00272 1.01518 1.20752 0.91566 0.94040 0.77509 0.93261 1.21031 1.32382 1.13494 0.88760 0.91185 1.24877 0.94945 0.95134 0.99004 1.69902 1.36145 1.22605 1.24135 0.86262 0.78502 0.79931 0.81367 1.20415 1.20980 1.19589 1.86646 1.75199 1.42743 1.20637 1.19487 0.74953 0.84576 0.83060 1.90807 1.48491 1.15447 1.84147 1.21205 1.02875 0.91089 0.93857 1.20171 1.15016 1.00427 0.89774 1.19359 1.00432 0.86536 0.84598 1.49461 1.54175 1.06787 1.09236 1.77918 1.17229 1.16662 0.92415 1.21955 1.02348 0.84167 0.90800 1.22646 1.04065 0.99678 0.94943 1.23109 0.94498 0.84814 1.00220 1.86647 1.70815 1.42000 1.19886 0.94318 0.88121 0.96346 0.92423 0.81475 0.89046 0.87676 0.87148 0.89181 0.90883 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.33 37.16 0.35 -3.74 16 2 C 0.21 5.98 2.56 -27.88 -0.07 5.91 16 3 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 4 C -0.52 -15.04 8.90 -34.44 -0.31 -15.35 16 5 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 O -0.34 -8.74 9.87 -40.58 -0.40 -9.14 16 13 C 0.54 12.64 7.94 34.55 0.27 12.92 16 14 O -0.50 -12.56 16.16 -19.25 -0.31 -12.87 16 15 C 0.08 1.50 7.13 -82.73 -0.59 0.91 16 16 C -0.22 -3.75 10.58 -39.61 -0.42 -4.17 16 17 C 0.26 3.63 7.57 -16.72 -0.13 3.51 16 18 N -0.40 -5.56 4.08 -60.93 -0.25 -5.80 16 19 N -0.21 -3.91 12.67 33.42 0.42 -3.49 16 20 C 0.13 1.05 7.41 -3.65 -0.03 1.02 16 21 C -0.17 -0.89 6.16 -26.34 -0.16 -1.05 16 22 C 0.05 0.30 7.00 37.28 0.26 0.57 16 23 O -0.29 -3.22 10.65 -19.84 -0.21 -3.43 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.10 2.78 6.07 -51.93 -0.32 2.47 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -34.04 298.03 -5.60 -39.64 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.04 Total: -3.00 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.91 Total: 2.18 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.80 Total: -34.38 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.92 Total: -25.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.04 -5.60 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763979172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.133 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds