Wall clock time and date at job start Mon Mar 30 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47884 * 2 1 4 4 C 1.50700 * 109.46952 * 120.00127 * 2 1 3 5 5 H 1.07998 * 120.00206 * 119.99362 * 4 2 1 6 6 C 1.37875 * 119.99898 * 299.99899 * 4 2 1 7 7 N 1.31516 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47244 * 89.99828 * 8 6 4 10 10 H 1.48500 * 109.47406 * 209.99701 * 8 6 4 11 11 H 1.48499 * 109.47140 * 329.99997 * 8 6 4 12 12 O 1.45204 * 109.46931 * 239.99455 * 2 1 3 13 13 C 1.34734 * 116.99359 * 90.00389 * 12 2 1 14 14 O 1.21485 * 120.00523 * 0.02562 * 13 12 2 15 15 C 1.47594 * 119.99404 * 179.97438 * 13 12 2 16 16 C 1.41345 * 125.95479 * 180.02562 * 15 13 12 17 17 C 1.34840 * 107.70313 * 179.97438 * 16 15 13 18 18 N 1.36409 * 107.93830 * 0.09520 * 17 16 15 19 19 N 1.32157 * 125.96360 * 359.97438 * 15 13 12 20 20 C 1.46717 * 123.62268 * 179.80569 * 18 17 16 21 21 C 1.53528 * 107.96475 * 343.06995 * 20 18 17 22 22 C 1.53235 * 109.30294 * 47.26953 * 21 20 18 23 23 O 1.36030 * 128.62178 * 180.22034 * 17 16 15 24 24 H 1.08991 * 109.47449 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46957 * 300.00163 * 1 2 3 26 26 H 1.09007 * 109.46660 * 59.99460 * 1 2 3 27 27 H 0.96997 * 119.99647 * 180.02562 * 7 6 4 28 28 H 1.08002 * 126.14566 * 359.68286 * 16 15 13 29 29 H 1.09010 * 109.76150 * 102.68213 * 20 18 17 30 30 H 1.08999 * 109.76616 * 223.39973 * 20 18 17 31 31 H 1.09000 * 109.50103 * 167.21537 * 21 20 18 32 32 H 1.08997 * 109.49784 * 287.32546 * 21 20 18 33 33 H 1.08994 * 109.50550 * 55.34256 * 22 21 20 34 34 H 1.09001 * 109.50021 * 175.46108 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5461 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4857 -2.5663 3.7120 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0667 -2.2852 14 8 1.9979 1.2611 -2.2543 15 6 2.7097 -0.5612 -3.5271 16 6 2.9666 0.1035 -4.7477 17 6 3.4011 -0.8169 -5.6322 18 7 3.4203 -2.0274 -5.0037 19 7 2.9876 -1.8428 -3.6914 20 6 3.8361 -3.2746 -5.6551 21 6 3.8086 -3.0478 -7.1733 22 6 4.5135 -1.7272 -7.5010 23 8 3.7720 -0.6396 -6.9289 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.7096 1.1618 3.4843 28 1 2.8338 1.1581 -4.9391 29 1 4.8463 -3.5361 -5.3398 30 1 3.1477 -4.0767 -5.3890 31 1 4.3230 -3.8685 -7.6732 32 1 2.7748 -3.0031 -7.5158 33 1 5.5209 -1.7394 -7.0851 34 1 4.5671 -1.6020 -8.5825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763979172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:32 Heat of formation + Delta-G solvation = -63.573489 kcal Electronic energy + Delta-G solvation = -19788.915043 eV Core-core repulsion = 16495.507083 eV Total energy + Delta-G solvation = -3293.407960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.97948 -41.18919 -39.52046 -37.63479 -35.70773 -35.34285 -32.36468 -31.48417 -30.67604 -27.72681 -27.44136 -25.69591 -24.15539 -22.86244 -21.25707 -20.82779 -19.55504 -18.66189 -18.22488 -17.57878 -17.21998 -16.74129 -16.69845 -16.30286 -16.20685 -15.74578 -15.13808 -14.92178 -14.38756 -14.26436 -13.98024 -13.44989 -13.21239 -13.01551 -12.83784 -12.66106 -12.45358 -12.38799 -12.15922 -12.12281 -11.90215 -11.76408 -11.63113 -11.01742 -10.60684 -10.35851 -9.66916 -8.28529 -6.45499 -0.01543 0.89554 0.96658 1.41922 1.45064 1.55071 1.64664 2.00507 2.21202 2.43008 3.01633 3.03961 3.54619 3.58993 3.93573 4.00456 4.12234 4.31427 4.40074 4.49057 4.52957 4.55857 4.66203 4.78568 4.80111 4.93938 5.00480 5.10037 5.19316 5.45728 5.58981 5.82542 6.00822 6.13720 6.14708 6.57635 6.85009 7.25100 8.79707 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038034 B = 0.004048 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.009715 B = 6914.618709 C = 7366.067057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 H 0.015 0.985 4 C -0.550 4.550 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.986 3.014 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.264 1.264 12 O -0.348 6.348 13 C 0.537 3.463 14 O -0.528 6.528 15 C 0.048 3.952 16 C -0.245 4.245 17 C 0.278 3.722 18 N -0.381 5.381 19 N -0.239 5.239 20 C 0.107 3.893 21 C -0.162 4.162 22 C 0.034 3.966 23 O -0.292 6.292 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.025 0.975 27 H 0.272 0.728 28 H 0.170 0.830 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 -10.019 -22.001 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.588 4.588 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.808 3.192 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.189 1.189 12 O -0.263 6.263 13 C 0.379 3.621 14 O -0.416 6.416 15 C -0.116 4.116 16 C -0.274 4.274 17 C 0.111 3.889 18 N -0.180 5.180 19 N -0.071 5.071 20 C -0.011 4.011 21 C -0.200 4.200 22 C -0.040 4.040 23 O -0.199 6.199 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.188 0.812 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.703 -10.565 -21.515 25.176 hybrid contribution -0.002 0.752 0.646 0.991 sum 7.700 -9.813 -20.869 24.313 Atomic orbital electron populations 1.22002 0.96375 1.00520 1.01135 1.20542 0.92369 0.92391 0.78564 0.96735 1.21260 1.33651 1.13996 0.89859 0.91671 1.25833 0.94609 0.95689 1.02025 1.70011 1.36401 1.23553 1.25358 0.85145 0.78220 0.78812 0.76983 1.19611 1.19705 1.18857 1.86631 1.75714 1.42974 1.20969 1.20070 0.74119 0.84438 0.83432 1.90767 1.49729 1.16489 1.84642 1.20708 1.05581 0.92241 0.93033 1.20215 1.16441 1.01252 0.89517 1.19182 0.98374 0.85858 0.85509 1.49888 1.51912 1.08593 1.07651 1.77777 1.18076 1.15956 0.95306 1.22658 1.03621 0.82139 0.92678 1.22698 1.04424 1.00551 0.92358 1.23669 0.94432 0.83923 1.01971 1.86691 1.71069 1.44480 1.17694 0.93601 0.89531 0.95561 0.91823 0.81235 0.86920 0.86690 0.82624 0.89534 0.89759 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.76 9.33 71.98 0.67 -7.08 16 2 C 0.21 12.55 2.56 29.85 0.08 12.63 16 3 H 0.01 0.95 7.16 -2.39 -0.02 0.93 16 4 C -0.55 -32.82 8.90 25.60 0.23 -32.59 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 6 C 0.02 1.04 5.30 84.65 0.45 1.48 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.99 44.07 29.54 68.60 2.03 46.10 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 O -0.35 -18.91 9.87 -56.44 -0.56 -19.47 16 13 C 0.54 26.59 7.94 70.29 0.56 27.15 16 14 O -0.53 -28.02 16.16 19.88 0.32 -27.70 16 15 C 0.05 1.96 7.13 42.33 0.30 2.26 16 16 C -0.24 -8.33 10.58 22.25 0.24 -8.09 16 17 C 0.28 7.55 7.57 83.20 0.63 8.18 16 18 N -0.38 -10.04 4.08 -457.17 -1.87 -11.91 16 19 N -0.24 -8.88 12.67 -48.19 -0.61 -9.49 16 20 C 0.11 1.40 7.41 86.52 0.64 2.05 16 21 C -0.16 -0.89 6.16 30.85 0.19 -0.70 16 22 C 0.03 0.27 7.00 72.06 0.50 0.78 16 23 O -0.29 -5.80 10.65 -93.89 -1.00 -6.80 16 24 H 0.04 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.09 4.94 6.07 -2.39 -0.01 4.93 16 26 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.17 5.45 8.06 -2.91 -0.02 5.42 16 29 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.16 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -77.42 298.03 4.16 -73.27 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.12 Total: 3.43 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 4.49 Total: 6.05 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.23 Total: -74.88 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -1.24 Total: -53.97 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -77.42 4.16 -73.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763979172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.692 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds