Wall clock time and date at job start Mon Mar 30 2020 01:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00102 * 2 1 4 4 H 1.08001 * 119.99915 * 162.01142 * 3 2 1 5 5 C 1.38817 * 119.99930 * 341.73800 * 3 2 1 6 6 N 1.31618 * 119.99597 * 346.04174 * 5 3 2 7 7 Si 1.86795 * 119.99854 * 166.04246 * 5 3 2 8 8 H 1.48498 * 109.47014 * 60.00295 * 7 5 3 9 9 H 1.48500 * 109.46950 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47372 * 299.99778 * 7 5 3 11 11 C 1.46500 * 119.99959 * 179.97438 * 2 1 3 12 12 C 1.52991 * 109.47411 * 270.00282 * 11 2 1 13 13 H 1.08999 * 109.47344 * 304.99735 * 12 11 2 14 14 O 1.42905 * 109.47319 * 65.00306 * 12 11 2 15 15 C 1.50708 * 109.47096 * 184.99873 * 12 11 2 16 16 C 1.38233 * 119.99877 * 279.72805 * 15 12 11 17 17 C 1.38236 * 119.99894 * 179.78647 * 16 15 12 18 18 C 1.38235 * 119.99705 * 0.46512 * 17 16 15 19 19 N 1.48023 * 120.00092 * 179.79139 * 18 17 16 20 20 O 1.21802 * 120.00335 * 179.97438 * 19 18 17 21 21 O 1.21798 * 119.99772 * 359.97145 * 19 18 17 22 22 C 1.38237 * 120.00444 * 359.76543 * 18 17 16 23 23 C 1.38231 * 119.99734 * 99.99925 * 15 12 11 24 24 H 1.08996 * 109.46941 * 84.92837 * 1 2 3 25 25 H 1.08996 * 109.46831 * 204.93151 * 1 2 3 26 26 H 1.08998 * 109.47001 * 324.93358 * 1 2 3 27 27 H 0.97000 * 119.99826 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46607 * 30.00732 * 11 2 1 29 29 H 1.09000 * 109.46754 * 149.99467 * 11 2 1 30 30 H 0.96697 * 113.99797 * 59.99337 * 14 12 11 31 31 H 1.08003 * 120.00074 * 359.97438 * 16 15 12 32 32 H 1.08000 * 120.00235 * 180.25625 * 17 16 15 33 33 H 1.07997 * 120.00593 * 179.97438 * 22 18 17 34 34 H 1.08000 * 120.00131 * 359.97438 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1902 1.2087 0.2889 5 6 1.5081 2.3578 -0.3767 6 7 0.3447 2.3032 -0.9897 7 14 2.2959 4.0121 -0.0137 8 1 3.6149 4.0916 -0.6912 9 1 1.4168 5.0994 -0.5138 10 1 2.4825 4.1606 1.4521 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 2.9642 -0.9124 1.9819 14 8 1.2060 -1.9928 2.0822 15 6 3.3107 -2.9487 1.4454 16 6 2.7397 -4.1854 1.2102 17 6 3.5276 -5.3213 1.2080 18 6 4.8849 -5.2214 1.4504 19 7 5.7279 -6.4381 1.4525 20 8 6.9239 -6.3501 1.6657 21 8 5.2255 -7.5274 1.2412 22 6 5.4551 -3.9852 1.6903 23 6 4.6678 -2.8488 1.6883 24 1 -0.3633 0.0908 -1.0236 25 1 -0.3633 -0.9319 0.4332 26 1 -0.3633 0.8411 0.5904 27 1 -0.1039 3.1221 -1.2527 28 1 1.6084 -2.0285 -0.5131 29 1 3.1499 -1.1386 -0.5134 30 1 0.6955 -2.6943 1.6552 31 1 1.6786 -4.2639 1.0253 32 1 3.0823 -6.2871 1.0201 33 1 6.5154 -3.9071 1.8801 34 1 5.1132 -1.8830 1.8759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776582376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:10 Heat of formation + Delta-G solvation = -2.307122 kcal Electronic energy + Delta-G solvation = -19670.615986 eV Core-core repulsion = 16379.864735 eV Total energy + Delta-G solvation = -3290.751251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.22562 -39.93883 -37.27077 -36.62327 -35.01413 -32.47657 -31.51883 -31.30943 -28.54011 -26.26789 -25.85342 -23.69607 -23.22792 -21.62157 -20.75727 -19.44857 -18.72172 -17.58584 -17.38132 -16.69429 -15.85782 -15.37607 -14.96328 -14.81166 -14.29310 -13.90313 -13.69371 -13.49427 -13.06382 -12.83868 -12.04502 -11.74896 -11.59828 -11.33525 -11.25738 -11.21826 -11.14342 -10.89991 -10.85273 -10.52241 -10.23924 -10.00847 -9.93906 -9.54511 -9.44259 -8.64568 -6.94110 -5.87247 -3.28558 -0.25629 0.82413 1.26943 1.35579 3.14189 3.30195 3.36476 3.36650 4.22873 4.29037 4.34400 4.47838 4.59678 4.83844 4.86521 5.10189 5.25495 5.39367 5.46913 5.57604 5.62287 5.65763 5.81716 5.97917 6.11021 6.34192 6.39518 6.47399 6.68603 7.33831 7.56080 7.58007 7.69478 7.82416 8.21298 9.06980 9.69577 10.15210 11.16809 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.003991 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.930150 B = 7013.970293 C = 7503.936288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.588 5.588 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.283 1.283 11 C 0.130 3.870 12 C 0.109 3.891 13 H 0.115 0.885 14 O -0.541 6.541 15 C -0.045 4.045 16 C -0.118 4.118 17 C -0.050 4.050 18 C -0.061 4.061 19 N 0.034 4.966 20 O -0.170 6.170 21 O -0.170 6.170 22 C -0.051 4.051 23 C -0.112 4.112 24 H 0.026 0.974 25 H 0.002 0.998 26 H 0.047 0.953 27 H 0.255 0.745 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.363 0.637 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -12.211 4.322 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.307 5.307 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.208 1.208 9 H -0.215 1.215 10 H -0.209 1.209 11 C 0.000 4.000 12 C 0.046 3.954 13 H 0.133 0.867 14 O -0.346 6.346 15 C -0.048 4.048 16 C -0.136 4.136 17 C -0.069 4.069 18 C -0.144 4.144 19 N 0.551 4.449 20 O -0.384 6.384 21 O -0.384 6.384 22 C -0.070 4.070 23 C -0.131 4.131 24 H 0.045 0.955 25 H 0.020 0.980 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.210 0.790 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.544 -10.948 4.615 12.720 hybrid contribution 0.516 0.141 -0.221 0.579 sum 5.060 -10.807 4.393 12.716 Atomic orbital electron populations 1.20839 0.81817 0.96109 0.99092 1.43862 1.02292 1.00134 1.84458 1.19184 0.95645 0.84847 1.39611 0.91153 1.24950 0.97412 0.98460 0.98599 1.70096 1.16635 1.26947 1.41045 0.86296 0.78424 0.83370 0.78241 1.20844 1.21479 1.20921 1.21310 0.97354 0.89725 0.91614 1.22238 0.82926 0.90888 0.99300 0.86733 1.86714 1.31948 1.59587 1.56307 1.21520 0.95355 0.97056 0.90821 1.20951 1.00747 0.90749 1.01200 1.20978 0.90431 1.01027 0.94484 1.21055 0.91799 0.84999 1.16588 1.43654 1.01364 1.02647 0.97276 1.94522 0.98079 1.93338 1.52476 1.94517 1.76740 1.14652 1.52540 1.21036 1.01847 0.89685 0.94464 1.21132 0.93027 0.98546 1.00430 0.95528 0.97967 0.93376 0.93461 0.93703 0.92290 0.79003 0.83839 0.83194 0.83150 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.85 8.74 59.85 0.52 4.38 16 2 N -0.59 -13.62 2.89 -181.12 -0.52 -14.15 16 3 C -0.26 -6.80 9.70 -15.06 -0.15 -6.95 16 4 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 5 C 0.00 0.12 5.10 -17.43 -0.09 0.04 16 6 N -0.90 -25.31 10.49 55.49 0.58 -24.73 16 7 Si 0.91 20.94 29.58 -169.99 -5.03 15.91 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.13 2.28 5.28 -4.05 -0.02 2.26 16 12 C 0.11 1.61 3.45 -27.88 -0.10 1.51 16 13 H 0.12 1.88 8.00 -51.93 -0.42 1.46 16 14 O -0.54 -8.21 12.11 -35.23 -0.43 -8.64 16 15 C -0.05 -0.54 4.97 -104.62 -0.52 -1.06 16 16 C -0.12 -1.20 9.32 -39.58 -0.37 -1.57 16 17 C -0.05 -0.53 9.56 -39.58 -0.38 -0.90 16 18 C -0.06 -0.74 6.85 -79.95 -0.55 -1.28 16 19 N 0.03 0.47 4.45 33.96 0.15 0.62 16 20 O -0.17 -2.45 18.45 -29.46 -0.54 -2.99 16 21 O -0.17 -2.44 18.45 -29.46 -0.54 -2.98 16 22 C -0.05 -0.56 9.56 -39.58 -0.38 -0.94 16 23 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 24 H 0.03 0.67 7.46 -51.93 -0.39 0.28 16 25 H 0.00 0.04 7.22 -51.93 -0.37 -0.34 16 26 H 0.05 1.24 7.03 -51.93 -0.37 0.87 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.36 4.11 7.49 45.56 0.34 4.45 16 31 H 0.14 1.13 6.78 -52.48 -0.36 0.77 16 32 H 0.15 1.34 7.61 -52.49 -0.40 0.94 16 33 H 0.15 1.41 7.61 -52.49 -0.40 1.01 16 34 H 0.15 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -30.31 299.47 -7.39 -37.70 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.16 Total: 0.86 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.41 Total: -6.12 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.51 Total: -14.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.31 -7.39 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.394 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds