Wall clock time and date at job start Mon Mar 30 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00102 * 2 1 4 4 H 1.08001 * 119.99915 * 162.01142 * 3 2 1 5 5 C 1.38817 * 119.99930 * 341.73800 * 3 2 1 6 6 N 1.31618 * 119.99597 * 346.04174 * 5 3 2 7 7 Si 1.86795 * 119.99854 * 166.04246 * 5 3 2 8 8 H 1.48498 * 109.47014 * 60.00295 * 7 5 3 9 9 H 1.48500 * 109.46950 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47372 * 299.99778 * 7 5 3 11 11 C 1.46500 * 119.99959 * 179.97438 * 2 1 3 12 12 C 1.52991 * 109.47411 * 270.00282 * 11 2 1 13 13 H 1.08999 * 109.47344 * 304.99735 * 12 11 2 14 14 O 1.42905 * 109.47319 * 65.00306 * 12 11 2 15 15 C 1.50708 * 109.47096 * 184.99873 * 12 11 2 16 16 C 1.38233 * 119.99877 * 279.72805 * 15 12 11 17 17 C 1.38236 * 119.99894 * 179.78647 * 16 15 12 18 18 C 1.38235 * 119.99705 * 0.46512 * 17 16 15 19 19 N 1.48023 * 120.00092 * 179.79139 * 18 17 16 20 20 O 1.21802 * 120.00335 * 179.97438 * 19 18 17 21 21 O 1.21798 * 119.99772 * 359.97145 * 19 18 17 22 22 C 1.38237 * 120.00444 * 359.76543 * 18 17 16 23 23 C 1.38231 * 119.99734 * 99.99925 * 15 12 11 24 24 H 1.08996 * 109.46941 * 84.92837 * 1 2 3 25 25 H 1.08996 * 109.46831 * 204.93151 * 1 2 3 26 26 H 1.08998 * 109.47001 * 324.93358 * 1 2 3 27 27 H 0.97000 * 119.99826 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46607 * 30.00732 * 11 2 1 29 29 H 1.09000 * 109.46754 * 149.99467 * 11 2 1 30 30 H 0.96697 * 113.99797 * 59.99337 * 14 12 11 31 31 H 1.08003 * 120.00074 * 359.97438 * 16 15 12 32 32 H 1.08000 * 120.00235 * 180.25625 * 17 16 15 33 33 H 1.07997 * 120.00593 * 179.97438 * 22 18 17 34 34 H 1.08000 * 120.00131 * 359.97438 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1902 1.2087 0.2889 5 6 1.5081 2.3578 -0.3767 6 7 0.3447 2.3032 -0.9897 7 14 2.2959 4.0121 -0.0137 8 1 3.6149 4.0916 -0.6912 9 1 1.4168 5.0994 -0.5138 10 1 2.4825 4.1606 1.4521 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 2.9642 -0.9124 1.9819 14 8 1.2060 -1.9928 2.0822 15 6 3.3107 -2.9487 1.4454 16 6 2.7397 -4.1854 1.2102 17 6 3.5276 -5.3213 1.2080 18 6 4.8849 -5.2214 1.4504 19 7 5.7279 -6.4381 1.4525 20 8 6.9239 -6.3501 1.6657 21 8 5.2255 -7.5274 1.2412 22 6 5.4551 -3.9852 1.6903 23 6 4.6678 -2.8488 1.6883 24 1 -0.3633 0.0908 -1.0236 25 1 -0.3633 -0.9319 0.4332 26 1 -0.3633 0.8411 0.5904 27 1 -0.1039 3.1221 -1.2527 28 1 1.6084 -2.0285 -0.5131 29 1 3.1499 -1.1386 -0.5134 30 1 0.6955 -2.6943 1.6552 31 1 1.6786 -4.2639 1.0253 32 1 3.0823 -6.2871 1.0201 33 1 6.5154 -3.9071 1.8801 34 1 5.1132 -1.8830 1.8759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776582376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:09 Heat of formation + Delta-G solvation = -21.200006 kcal Electronic energy + Delta-G solvation = -19671.435243 eV Core-core repulsion = 16379.864735 eV Total energy + Delta-G solvation = -3291.570508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26392 -40.92411 -38.52591 -37.69610 -36.63782 -33.62438 -32.99504 -32.37832 -29.87661 -27.90240 -27.34754 -24.94799 -24.16512 -22.96567 -22.11223 -20.40326 -19.77052 -18.90441 -18.62550 -18.14791 -16.94941 -16.73837 -16.41630 -15.81965 -15.56860 -15.34358 -14.84466 -14.50540 -14.47559 -14.09632 -13.68726 -13.02587 -12.81508 -12.76933 -12.61010 -12.53942 -12.34461 -12.32089 -12.22824 -12.18059 -11.95952 -11.87099 -11.30022 -10.63017 -10.39083 -10.37545 -8.78449 -7.82515 -5.26936 -1.26051 -0.01095 0.26631 0.36717 1.47229 1.49977 1.55616 2.24908 2.50873 3.24861 3.35825 3.39088 3.51402 3.55109 3.84434 3.95784 3.99322 4.26969 4.30070 4.38936 4.67870 4.75043 4.77081 4.87207 4.92991 4.99422 5.14880 5.32848 5.43947 5.47523 5.61003 5.76882 6.30086 6.47653 6.85208 7.14780 7.87209 8.27783 9.20050 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.003991 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.930150 B = 7013.970293 C = 7503.936288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.078 0.922 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.280 1.280 11 C 0.127 3.873 12 C 0.129 3.871 13 H 0.096 0.904 14 O -0.557 6.557 15 C -0.050 4.050 16 C -0.107 4.107 17 C -0.047 4.047 18 C -0.069 4.069 19 N 0.033 4.967 20 O -0.186 6.186 21 O -0.178 6.178 22 C -0.050 4.050 23 C -0.110 4.110 24 H -0.003 1.003 25 H 0.038 0.962 26 H 0.012 0.988 27 H 0.247 0.753 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.381 0.619 31 H 0.172 0.828 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -13.656 4.995 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.794 3.206 8 H -0.200 1.200 9 H -0.224 1.224 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.067 3.933 13 H 0.114 0.886 14 O -0.364 6.364 15 C -0.051 4.051 16 C -0.126 4.126 17 C -0.066 4.066 18 C -0.153 4.153 19 N 0.547 4.453 20 O -0.398 6.398 21 O -0.392 6.392 22 C -0.069 4.069 23 C -0.129 4.129 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.189 0.811 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.370 -12.468 5.311 14.577 hybrid contribution 0.345 0.367 -0.381 0.632 sum 5.715 -12.101 4.930 14.262 Atomic orbital electron populations 1.20520 0.82381 0.96362 0.96937 1.44036 1.02312 1.01341 1.85523 1.19567 0.96047 0.86032 1.37797 0.90460 1.25673 0.98237 1.01523 0.99500 1.70261 1.18197 1.26841 1.43344 0.85369 0.77630 0.79677 0.77962 1.19961 1.22432 1.20601 1.21529 0.96929 0.87954 0.93603 1.21663 0.83357 0.91771 0.96474 0.88576 1.86683 1.32312 1.60659 1.56773 1.21279 0.95273 0.96495 0.92083 1.21223 1.02080 0.89694 0.99574 1.21221 0.89749 1.02012 0.93624 1.21327 0.92309 0.84516 1.17111 1.43922 1.01429 1.03089 0.96853 1.94519 0.98661 1.93500 1.53107 1.94506 1.76659 1.15364 1.52646 1.21193 1.02638 0.89163 0.93950 1.21297 0.92746 0.99184 0.99665 0.98440 0.94308 0.96890 0.94404 0.91727 0.92503 0.76910 0.81065 0.81386 0.81852 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.52 8.74 127.77 1.12 9.64 16 2 N -0.61 -27.93 2.89 -726.95 -2.10 -30.03 16 3 C -0.26 -13.61 9.70 84.03 0.81 -12.79 16 4 H 0.08 3.75 7.87 -2.91 -0.02 3.73 16 5 C -0.05 -2.95 5.10 84.86 0.43 -2.52 16 6 N -0.94 -54.21 10.49 21.65 0.23 -53.98 16 7 Si 0.97 43.58 29.58 68.60 2.03 45.61 16 8 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 9 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 C 0.13 4.21 5.28 86.38 0.46 4.66 16 12 C 0.13 3.50 3.45 29.85 0.10 3.61 16 13 H 0.10 2.99 8.00 -2.39 -0.02 2.97 16 14 O -0.56 -15.29 12.11 -148.98 -1.80 -17.10 16 15 C -0.05 -1.01 4.97 -19.86 -0.10 -1.11 16 16 C -0.11 -1.76 9.32 22.27 0.21 -1.55 16 17 C -0.05 -0.82 9.56 22.27 0.21 -0.61 16 18 C -0.07 -1.48 6.85 36.37 0.25 -1.23 16 19 N 0.03 0.84 4.45 -46.46 -0.21 0.64 16 20 O -0.19 -5.10 18.45 18.88 0.35 -4.75 16 21 O -0.18 -4.75 18.45 18.89 0.35 -4.40 16 22 C -0.05 -0.96 9.56 22.27 0.21 -0.75 16 23 C -0.11 -2.09 9.67 22.27 0.22 -1.87 16 24 H 0.00 -0.14 7.46 -2.39 -0.02 -0.16 16 25 H 0.04 1.47 7.22 -2.39 -0.02 1.45 16 26 H 0.01 0.66 7.03 -2.39 -0.02 0.64 16 27 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 29 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 30 H 0.38 7.14 7.49 -74.06 -0.55 6.58 16 31 H 0.17 1.84 6.78 -2.91 -0.02 1.82 16 32 H 0.17 2.35 7.61 -2.91 -0.02 2.33 16 33 H 0.16 2.66 7.61 -2.91 -0.02 2.64 16 34 H 0.16 2.61 8.04 -2.91 -0.02 2.59 16 Total: -1.00 -66.12 299.47 3.34 -62.78 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.58 Total: 5.77 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 3.92 Total: -4.53 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.08 Total: -83.38 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.11 Total: -26.24 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.12 3.34 -62.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.582 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds