Wall clock time and date at job start Mon Mar 30 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 H 1.09000 * 109.47115 * 305.00033 * 3 2 1 5 5 C 1.50696 * 109.47423 * 184.99722 * 3 2 1 6 6 H 1.07997 * 120.00539 * 239.99757 * 5 3 2 7 7 C 1.37886 * 119.99722 * 60.00136 * 5 3 2 8 8 N 1.31519 * 119.99871 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46912 * 119.99991 * 9 7 5 12 12 H 1.48501 * 109.47000 * 239.99767 * 9 7 5 13 13 O 1.45204 * 109.47206 * 64.99571 * 3 2 1 14 14 C 1.34755 * 117.00321 * 270.00194 * 13 3 2 15 15 O 1.21535 * 120.00305 * 0.02562 * 14 13 3 16 16 C 1.47242 * 120.00245 * 179.97438 * 14 13 3 17 17 C 1.38293 * 126.47351 * 0.03004 * 16 14 13 18 18 N 1.34223 * 108.39144 * 179.97438 * 17 16 14 19 19 H 0.96998 * 125.38244 * 179.97438 * 18 17 16 20 20 C 1.37795 * 109.23299 * 359.97438 * 18 17 16 21 21 C 1.46816 * 125.83943 * 179.97438 * 20 18 17 22 22 N 1.34777 * 120.00175 * 0.03080 * 21 20 18 23 23 O 1.21681 * 120.00279 * 180.02562 * 21 20 18 24 24 C 1.36327 * 108.32314 * 0.24848 * 20 18 17 25 25 H 1.08994 * 109.47796 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47292 * 300.00418 * 1 2 3 27 27 H 1.09004 * 109.47040 * 59.99531 * 1 2 3 28 28 H 1.08995 * 109.47036 * 239.99731 * 2 1 3 29 29 H 1.09002 * 109.46662 * 120.00094 * 2 1 3 30 30 H 0.96995 * 119.99309 * 179.97438 * 8 7 5 31 31 H 1.08002 * 125.80177 * 359.97312 * 17 16 14 32 32 H 0.97001 * 120.00485 * 180.02562 * 22 21 20 33 33 H 0.97005 * 119.99790 * 359.72021 * 22 21 20 34 34 H 1.07995 * 126.49953 * 179.74234 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3811 10 1 6.5988 1.5439 -0.1930 11 1 6.4961 -0.5193 -1.4626 12 1 6.4000 1.6154 -2.6091 13 8 1.6559 2.0917 1.2407 14 6 0.4681 2.7280 1.2560 15 8 -0.2280 2.7396 0.2598 16 6 0.0130 3.4083 2.4800 17 6 0.6926 3.4789 3.6824 18 7 -0.0513 4.1847 4.5484 19 1 0.1925 4.3840 5.4658 20 6 -1.2161 4.5813 3.9281 21 6 -2.2906 5.3716 4.5416 22 7 -2.1835 5.7743 5.8234 23 8 -3.2779 5.6633 3.8928 24 6 -1.2029 4.1092 2.6493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8293 -0.0613 -2.9498 31 1 1.6577 3.0406 3.8893 32 1 -2.8935 6.2962 6.2288 33 1 -1.3982 5.5385 6.3418 34 1 -1.9742 4.2463 1.9060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:39 Heat of formation + Delta-G solvation = -117.792320 kcal Electronic energy + Delta-G solvation = -19732.767347 eV Core-core repulsion = 16437.008282 eV Total energy + Delta-G solvation = -3295.759065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.64627 -40.91551 -39.91371 -37.43708 -35.41603 -34.90733 -33.34924 -32.42059 -30.73007 -29.21566 -25.70433 -24.54555 -24.10674 -22.00754 -21.35333 -20.71285 -19.97375 -18.64894 -18.14858 -17.88700 -17.02560 -16.84231 -16.76148 -16.20945 -16.10225 -14.98787 -14.92217 -14.76429 -14.69089 -14.46586 -13.83686 -13.56927 -13.28907 -13.19420 -13.04245 -12.78137 -12.50195 -12.08061 -11.71449 -11.56075 -11.41053 -11.26380 -10.85115 -10.75438 -10.48684 -10.27564 -9.50577 -8.22330 -6.38974 0.31544 0.59401 1.45601 1.46364 1.59972 1.85660 2.09071 2.10559 2.40337 2.42380 2.62072 3.07715 3.84662 3.90372 4.13906 4.25718 4.41600 4.44397 4.54882 4.75152 4.83825 4.91545 5.12854 5.27151 5.29767 5.44189 5.46803 5.57604 5.72905 5.78428 6.04163 6.19247 6.23230 6.43086 6.68068 7.12986 7.16865 7.33863 8.84968 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.004167 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.500225 B = 6717.761134 C = 7177.993382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.983 3.017 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.280 1.280 13 O -0.354 6.354 14 C 0.518 3.482 15 O -0.559 6.559 16 C -0.255 4.255 17 C 0.142 3.858 18 N -0.493 5.493 19 H 0.448 0.552 20 C -0.063 4.063 21 C 0.599 3.401 22 N -0.825 5.825 23 O -0.579 6.579 24 C -0.068 4.068 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.225 0.775 32 H 0.419 0.581 33 H 0.416 0.584 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 7.233 20.747 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.019 0.981 5 C -0.582 4.582 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.806 3.194 10 H -0.183 1.183 11 H -0.198 1.198 12 H -0.206 1.206 13 O -0.271 6.271 14 C 0.366 3.634 15 O -0.452 6.452 16 C -0.262 4.262 17 C -0.003 4.003 18 N -0.090 5.090 19 H 0.292 0.708 20 C -0.174 4.174 21 C 0.385 3.615 22 N -0.390 5.390 23 O -0.458 6.458 24 C -0.093 4.093 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.252 0.748 33 H 0.247 0.753 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.323 7.314 19.940 21.674 hybrid contribution 0.652 0.002 -0.322 0.728 sum -3.670 7.316 19.618 21.257 Atomic orbital electron populations 1.21713 0.96693 1.00376 0.99971 1.21856 0.94080 0.98219 1.02453 1.20358 0.94607 0.89166 0.78700 0.98094 1.21377 0.90284 1.39597 1.06920 0.91007 1.25846 1.04265 0.94002 0.94422 1.70046 1.37404 1.38167 1.09932 0.85135 0.77675 0.78196 0.78380 1.18318 1.19836 1.20588 1.86472 1.35150 1.63222 1.42213 1.20800 0.79471 0.75504 0.87635 1.90763 1.56561 1.60766 1.37143 1.18858 1.00070 1.13418 0.93824 1.23016 0.97458 0.92850 0.86987 1.41549 1.13789 1.39464 1.14240 0.70813 1.19709 0.91832 1.11684 0.94218 1.16943 0.84008 0.77970 0.82604 1.43402 1.26741 1.57446 1.11393 1.90900 1.32605 1.58474 1.63856 1.21039 0.96299 0.96350 0.95640 0.92058 0.94542 0.95017 0.89671 0.93080 0.92183 0.75816 0.74776 0.75255 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.56 71.98 0.62 -5.40 16 2 C -0.13 -6.55 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.41 2.25 29.85 0.07 12.47 16 4 H 0.00 0.08 7.16 -2.39 -0.02 0.06 16 5 C -0.54 -30.54 8.90 25.60 0.23 -30.31 16 6 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.35 -16.89 9.64 -56.65 -0.55 -17.44 16 14 C 0.52 23.24 6.40 70.19 0.45 23.69 16 15 O -0.56 -29.17 14.10 19.72 0.28 -28.89 16 16 C -0.25 -8.39 6.13 -20.13 -0.12 -8.52 16 17 C 0.14 2.85 11.76 84.34 0.99 3.84 16 18 N -0.49 -6.27 5.91 -183.31 -1.08 -7.35 16 19 H 0.45 0.62 8.13 -92.71 -0.75 -0.13 16 20 C -0.06 -1.38 6.99 40.01 0.28 -1.10 16 21 C 0.60 12.37 8.06 86.49 0.70 13.07 16 22 N -0.83 -6.66 8.87 -176.29 -1.56 -8.22 16 23 O -0.58 -18.05 17.69 -4.29 -0.08 -18.13 16 24 C -0.07 -2.13 10.37 22.59 0.23 -1.90 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 27 H 0.03 1.56 7.79 -2.39 -0.02 1.55 16 28 H 0.09 4.76 5.95 -2.39 -0.01 4.74 16 29 H 0.05 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.23 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.42 2.40 8.93 -92.71 -0.83 1.58 16 33 H 0.42 -0.02 7.91 -92.70 -0.73 -0.76 16 34 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -82.62 299.02 2.20 -80.42 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -1.14 Total: 7.22 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.06 Total: 0.68 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -2.40 Total: -68.31 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -0.34 Total: -64.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -82.62 2.20 -80.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.369 kcal (2) G-P(sol) polarization free energy of solvation -82.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds