Wall clock time and date at job start Mon Mar 30 2020 00:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.21212 * 119.99844 * 359.97438 * 5 4 2 7 7 O 1.34310 * 120.00076 * 179.97438 * 5 4 2 8 8 C 1.34926 * 116.99842 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99831 * 359.97438 * 8 7 5 10 10 C 1.38752 * 119.99621 * 180.02562 * 8 7 5 11 11 N 1.31442 * 120.00412 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99556 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47423 * 59.99906 * 12 10 8 14 14 H 1.48503 * 109.46845 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47318 * 299.99613 * 12 10 8 16 16 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 17 17 C 1.38243 * 119.97334 * 119.72959 * 16 2 1 18 18 C 1.38205 * 120.01946 * 179.72574 * 17 16 2 19 19 C 1.38458 * 119.97681 * 0.56554 * 18 17 16 20 20 F 1.35095 * 120.02756 * 179.67909 * 19 18 17 21 21 C 1.38461 * 119.94484 * 359.70854 * 19 18 17 22 22 C 1.38193 * 119.97683 * 359.97438 * 21 19 18 23 23 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 29 29 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 31 31 H 0.96996 * 120.00104 * 180.02562 * 11 10 8 32 32 H 1.07997 * 119.99090 * 359.97438 * 17 16 2 33 33 H 1.08005 * 120.01097 * 180.24824 * 18 17 16 34 34 H 1.08008 * 120.00980 * 179.97438 * 21 19 18 35 35 H 1.08007 * 119.98852 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8405 0.9744 -2.3685 7 8 1.8626 -0.4695 -3.6996 8 6 1.3806 0.2131 -4.7589 9 1 0.7632 1.0854 -4.6037 10 6 1.6773 -0.2066 -6.0478 11 7 2.4283 -1.2686 -6.2367 12 14 1.0094 0.7380 -7.5144 13 1 1.5051 2.1372 -7.4696 14 1 1.4677 0.0911 -8.7702 15 1 -0.4748 0.7370 -7.4697 16 6 2.0323 -0.7105 1.2305 17 6 2.8224 -1.8377 1.1030 18 6 3.2883 -2.4867 2.2307 19 6 2.9538 -2.0144 3.4885 20 9 3.4033 -2.6518 4.5916 21 6 2.1577 -0.8886 3.6149 22 6 1.6984 -0.2374 2.4858 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2492 31 1 2.6360 -1.5617 -7.1377 32 1 3.0790 -2.2089 0.1218 33 1 3.9089 -3.3650 2.1309 34 1 1.8957 -0.5195 4.5956 35 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869860854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:25 Heat of formation + Delta-G solvation = -108.931590 kcal Electronic energy + Delta-G solvation = -19811.158096 eV Core-core repulsion = 16495.863300 eV Total energy + Delta-G solvation = -3315.294796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.93539 -40.12279 -38.80447 -36.30091 -34.48845 -32.15706 -31.36496 -29.44431 -28.25144 -26.89086 -25.18825 -23.13875 -22.77267 -20.55155 -18.86323 -17.90787 -17.69174 -16.63588 -16.16463 -15.63899 -15.28771 -14.98987 -14.75641 -14.36679 -14.10937 -13.76200 -13.57560 -13.40903 -13.03005 -12.65547 -12.35406 -12.09468 -11.77621 -11.48995 -11.43570 -11.30026 -11.00179 -10.77584 -10.65772 -10.47353 -10.37861 -10.11133 -9.79518 -9.15225 -8.75652 -8.57849 -8.52137 -6.41240 -4.09146 1.11626 1.18451 3.12286 3.18253 3.22083 3.52646 3.55158 3.92211 4.21428 4.43187 4.62942 4.81251 4.90913 5.10208 5.13185 5.24922 5.30084 5.37504 5.49843 5.83865 5.95580 5.97768 6.00452 6.02923 6.05665 6.14349 6.23636 6.31302 6.34794 6.52482 6.75825 6.79441 6.84770 6.93284 7.40743 7.96452 8.74160 9.07833 9.86733 10.76779 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041845 B = 0.003990 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.969985 B = 7016.056230 C = 7493.969768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.100 4.100 5 C 0.400 3.600 6 O -0.548 6.548 7 O -0.215 6.215 8 C -0.382 4.382 9 H 0.095 0.905 10 C 0.042 3.958 11 N -0.866 5.866 12 Si 0.942 3.058 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.270 1.270 16 C -0.069 4.069 17 C -0.095 4.095 18 C -0.150 4.150 19 C 0.083 3.917 20 F -0.146 7.146 21 C -0.153 4.153 22 C -0.086 4.086 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.270 0.730 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -0.507 15.443 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 C -0.207 4.207 4 C -0.138 4.138 5 C 0.247 3.753 6 O -0.446 6.446 7 O -0.122 6.122 8 C -0.459 4.459 9 H 0.113 0.887 10 C -0.162 4.162 11 N -0.503 5.503 12 Si 0.767 3.233 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.195 1.195 16 C -0.069 4.069 17 C -0.113 4.113 18 C -0.168 4.168 19 C 0.064 3.936 20 F -0.124 7.124 21 C -0.172 4.172 22 C -0.104 4.104 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.288 -0.423 15.308 15.317 hybrid contribution -0.103 0.145 -0.412 0.448 sum 0.185 -0.278 14.897 14.900 Atomic orbital electron populations 1.22145 0.92914 1.01763 1.03855 1.19224 0.96624 0.95320 0.89490 1.22145 1.00228 0.94443 1.03851 1.21297 1.02166 1.00009 0.90305 1.23036 0.81585 0.84755 0.85881 1.90410 1.39364 1.27864 1.86980 1.83882 1.63623 1.51799 1.12937 1.21161 1.31747 1.11007 0.81958 0.88698 1.25320 0.96376 0.96507 0.97986 1.69979 1.34743 1.22905 1.22698 0.85764 0.79240 0.79173 0.79112 1.19519 1.20426 1.19515 1.20065 0.96739 0.95210 0.94870 1.21207 0.96498 0.94749 0.98860 1.21158 1.02728 1.01921 0.91021 1.17723 0.99213 0.93992 0.82723 1.91473 1.87727 1.81201 1.52042 1.21087 1.00065 0.95893 1.00122 1.20851 0.99012 0.99588 0.90946 0.93248 0.88611 0.93400 0.93397 0.88612 0.93254 0.88941 0.88944 0.92059 0.84181 0.84856 0.85054 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.99 37.16 0.30 -1.96 16 2 C -0.01 -0.10 0.60 -155.66 -0.09 -0.19 16 3 C -0.15 -2.25 7.99 37.16 0.30 -1.96 16 4 C -0.10 -1.70 3.54 -27.88 -0.10 -1.80 16 5 C 0.40 9.22 7.32 36.00 0.26 9.48 16 6 O -0.55 -13.19 10.58 -19.05 -0.20 -13.39 16 7 O -0.22 -5.99 9.75 -20.72 -0.20 -6.19 16 8 C -0.38 -11.05 9.64 30.92 0.30 -10.75 16 9 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 10 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 11 N -0.87 -25.13 13.67 55.48 0.76 -24.37 16 12 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 C -0.07 -0.88 4.76 -104.62 -0.50 -1.38 16 17 C -0.10 -1.16 8.97 -39.59 -0.36 -1.52 16 18 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 19 C 0.08 0.99 7.30 -39.42 -0.29 0.70 16 20 F -0.15 -1.80 17.27 2.25 0.04 -1.76 16 21 C -0.15 -1.68 10.03 -39.52 -0.40 -2.07 16 22 C -0.09 -0.98 8.71 -39.60 -0.34 -1.33 16 23 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 24 H 0.10 1.74 5.51 -51.93 -0.29 1.45 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 1.73 5.51 -51.93 -0.29 1.45 16 28 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 29 H 0.09 1.45 7.52 -51.93 -0.39 1.06 16 30 H 0.09 1.45 7.50 -51.93 -0.39 1.06 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.14 1.61 5.89 -52.49 -0.31 1.30 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.31 7.10 -52.48 -0.37 0.94 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -30.95 295.88 -5.57 -36.52 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.99 Total: 2.54 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.41 Total: -13.82 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.37 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.40 Total: -19.58 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.95 -5.57 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869860854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.414 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds