Wall clock time and date at job start Mon Mar 30 2020 00:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.21212 * 119.99844 * 359.97438 * 5 4 2 7 7 O 1.34310 * 120.00076 * 179.97438 * 5 4 2 8 8 C 1.34926 * 116.99842 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99831 * 359.97438 * 8 7 5 10 10 C 1.38752 * 119.99621 * 180.02562 * 8 7 5 11 11 N 1.31442 * 120.00412 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99556 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47423 * 59.99906 * 12 10 8 14 14 H 1.48503 * 109.46845 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47318 * 299.99613 * 12 10 8 16 16 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 17 17 C 1.38243 * 119.97334 * 119.72959 * 16 2 1 18 18 C 1.38205 * 120.01946 * 179.72574 * 17 16 2 19 19 C 1.38458 * 119.97681 * 0.56554 * 18 17 16 20 20 F 1.35095 * 120.02756 * 179.67909 * 19 18 17 21 21 C 1.38461 * 119.94484 * 359.70854 * 19 18 17 22 22 C 1.38193 * 119.97683 * 359.97438 * 21 19 18 23 23 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 29 29 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 31 31 H 0.96996 * 120.00104 * 180.02562 * 11 10 8 32 32 H 1.07997 * 119.99090 * 359.97438 * 17 16 2 33 33 H 1.08005 * 120.01097 * 180.24824 * 18 17 16 34 34 H 1.08008 * 120.00980 * 179.97438 * 21 19 18 35 35 H 1.08007 * 119.98852 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8405 0.9744 -2.3685 7 8 1.8626 -0.4695 -3.6996 8 6 1.3806 0.2131 -4.7589 9 1 0.7632 1.0854 -4.6037 10 6 1.6773 -0.2066 -6.0478 11 7 2.4283 -1.2686 -6.2367 12 14 1.0094 0.7380 -7.5144 13 1 1.5051 2.1372 -7.4696 14 1 1.4677 0.0911 -8.7702 15 1 -0.4748 0.7370 -7.4697 16 6 2.0323 -0.7105 1.2305 17 6 2.8224 -1.8377 1.1030 18 6 3.2883 -2.4867 2.2307 19 6 2.9538 -2.0144 3.4885 20 9 3.4033 -2.6518 4.5916 21 6 2.1577 -0.8886 3.6149 22 6 1.6984 -0.2374 2.4858 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7490 -1.2492 31 1 2.6360 -1.5617 -7.1377 32 1 3.0790 -2.2089 0.1218 33 1 3.9089 -3.3650 2.1309 34 1 1.8957 -0.5195 4.5956 35 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869860854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:24 Heat of formation + Delta-G solvation = -125.399295 kcal Electronic energy + Delta-G solvation = -19811.872189 eV Core-core repulsion = 16495.863300 eV Total energy + Delta-G solvation = -3316.008890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85373 -41.52383 -40.29124 -37.85223 -36.10556 -34.25889 -32.27998 -30.52311 -29.63575 -28.11289 -27.19841 -24.24807 -23.71648 -22.14382 -20.17824 -19.80294 -18.89395 -18.23735 -17.17466 -16.77560 -16.73928 -16.55314 -16.15163 -16.04379 -15.31370 -15.10176 -14.77361 -14.45166 -14.12987 -13.89499 -13.78188 -13.73299 -13.26558 -13.09827 -12.72726 -12.60490 -12.29353 -12.16261 -12.00513 -11.95433 -11.88078 -11.85247 -11.45271 -10.64446 -10.56611 -10.02038 -9.48182 -8.50037 -6.28920 0.18688 0.31642 1.35551 1.35674 1.51043 1.71638 2.13912 2.64143 2.79794 3.01580 3.32604 3.56588 3.80451 3.97364 4.01680 4.01909 4.25010 4.37614 4.48687 4.63309 4.69872 4.81332 4.86850 4.97941 5.01799 5.04611 5.08723 5.14776 5.18367 5.24669 5.30056 5.50877 5.56412 5.65049 5.89966 5.96421 6.79906 6.96246 7.85900 8.70767 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041845 B = 0.003990 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.969985 B = 7016.056230 C = 7493.969768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 C -0.147 4.147 4 C -0.093 4.093 5 C 0.399 3.601 6 O -0.558 6.558 7 O -0.252 6.252 8 C -0.417 4.417 9 H 0.084 0.916 10 C -0.006 4.006 11 N -0.906 5.906 12 Si 1.014 2.986 13 H -0.262 1.262 14 H -0.263 1.263 15 H -0.262 1.262 16 C -0.076 4.076 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.072 3.928 20 F -0.149 7.149 21 C -0.148 4.148 22 C -0.084 4.084 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.277 0.723 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -0.306 16.706 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 C -0.204 4.204 4 C -0.131 4.131 5 C 0.247 3.753 6 O -0.456 6.456 7 O -0.161 6.161 8 C -0.493 4.493 9 H 0.101 0.899 10 C -0.206 4.206 11 N -0.544 5.544 12 Si 0.833 3.167 13 H -0.187 1.187 14 H -0.187 1.187 15 H -0.187 1.187 16 C -0.076 4.076 17 C -0.121 4.121 18 C -0.170 4.170 19 C 0.053 3.947 20 F -0.128 7.128 21 C -0.167 4.167 22 C -0.102 4.102 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.141 -0.216 16.602 16.604 hybrid contribution -0.060 0.085 -0.629 0.638 sum 0.081 -0.131 15.973 15.974 Atomic orbital electron populations 1.22072 0.93203 1.01869 1.03266 1.19123 0.96366 0.95108 0.89316 1.22072 1.00492 0.94578 1.03263 1.21483 1.03040 1.00342 0.88229 1.24261 0.80346 0.84508 0.86184 1.90418 1.39461 1.28459 1.87232 1.83907 1.65032 1.52870 1.14258 1.21360 1.33053 1.11593 0.83296 0.89859 1.26474 0.96164 0.97355 1.00561 1.70069 1.35969 1.24467 1.23898 0.84732 0.78817 0.77916 0.75230 1.18669 1.18712 1.18664 1.19849 0.97801 0.95678 0.94319 1.21267 0.96678 0.94797 0.99340 1.21315 1.02630 1.02302 0.90705 1.17942 0.99563 0.94445 0.82733 1.91467 1.87822 1.81338 1.52198 1.21322 0.99097 0.95192 1.01064 1.21007 0.98886 1.00010 0.90303 0.90730 0.92173 0.92947 0.92945 0.92173 0.90735 0.87405 0.87400 0.91400 0.83909 0.83381 0.82793 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 7.99 71.98 0.58 -3.69 16 2 C 0.00 0.03 0.60 -52.93 -0.03 0.00 16 3 C -0.15 -4.26 7.99 71.98 0.57 -3.69 16 4 C -0.09 -3.15 3.54 29.85 0.11 -3.04 16 5 C 0.40 18.87 7.32 71.23 0.52 19.39 16 6 O -0.56 -27.77 10.58 20.77 0.22 -27.55 16 7 O -0.25 -14.50 9.75 14.82 0.14 -14.36 16 8 C -0.42 -24.91 9.64 67.94 0.66 -24.26 16 9 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 10 C -0.01 -0.33 5.49 84.87 0.47 0.14 16 11 N -0.91 -53.49 13.67 21.62 0.30 -53.20 16 12 Si 1.01 43.23 29.55 68.60 2.03 45.25 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 15 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 16 C -0.08 -1.77 4.76 -19.86 -0.09 -1.87 16 17 C -0.10 -2.30 8.97 22.26 0.20 -2.10 16 18 C -0.15 -3.13 10.03 22.31 0.22 -2.91 16 19 C 0.07 1.54 7.30 22.38 0.16 1.70 16 20 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 21 C -0.15 -2.77 10.03 22.31 0.22 -2.55 16 22 C -0.08 -1.65 8.71 22.26 0.19 -1.46 16 23 H 0.07 1.75 7.39 -2.39 -0.02 1.73 16 24 H 0.06 2.19 5.51 -2.39 -0.01 2.18 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 2.19 5.51 -2.39 -0.01 2.18 16 28 H 0.07 1.75 7.39 -2.39 -0.02 1.73 16 29 H 0.11 3.31 7.52 -2.38 -0.02 3.30 16 30 H 0.11 3.31 7.50 -2.39 -0.02 3.29 16 31 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.14 3.03 5.89 -2.91 -0.02 3.01 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.15 2.38 7.10 -2.91 -0.02 2.36 16 Total: -1.00 -68.53 295.88 8.35 -60.18 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.11 Total: 16.57 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.78 Total: -24.33 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.30 Total: -53.20 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: 0.36 Total: -41.91 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.53 8.35 -60.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869860854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.221 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds