Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 119.99913 * 2 1 4 4 H 1.07999 * 120.00296 * 214.94988 * 3 2 1 5 5 C 1.38993 * 120.00102 * 34.95041 * 3 2 1 6 6 N 1.31402 * 119.99745 * 5.19119 * 5 3 2 7 7 Si 1.86796 * 120.00336 * 185.19186 * 5 3 2 8 8 H 1.48499 * 109.47330 * 89.99678 * 7 5 3 9 9 H 1.48504 * 109.47322 * 209.99884 * 7 5 3 10 10 H 1.48501 * 109.46982 * 329.99676 * 7 5 3 11 11 C 1.34781 * 120.00566 * 179.97438 * 2 1 3 12 12 O 1.21652 * 119.99312 * 5.45088 * 11 2 1 13 13 C 1.47321 * 120.00228 * 185.45199 * 11 2 1 14 14 N 1.36074 * 126.45799 * 355.06614 * 13 11 2 15 15 C 1.29936 * 108.48416 * 179.97438 * 14 13 11 16 16 O 1.34048 * 109.26422 * 359.97438 * 15 14 13 17 17 C 1.34271 * 108.23227 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.53543 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.27855 * 165.65767 * 18 17 16 20 20 C 1.54950 * 110.30999 * 287.85625 * 18 17 16 21 21 C 1.55303 * 100.94153 * 155.35900 * 20 18 17 22 22 C 1.54380 * 102.25528 * 325.86460 * 21 20 18 23 23 O 1.43241 * 107.58923 * 21.35890 * 22 21 20 24 24 H 1.08998 * 109.47248 * 264.99646 * 1 2 3 25 25 H 1.08998 * 109.47105 * 25.00299 * 1 2 3 26 26 H 1.09001 * 109.46819 * 145.00308 * 1 2 3 27 27 H 0.97004 * 120.00382 * 179.97438 * 6 5 3 28 28 H 1.08000 * 125.36481 * 180.02562 * 15 14 13 29 29 H 1.09003 * 111.12097 * 273.27999 * 20 18 17 30 30 H 1.08997 * 111.12433 * 37.44047 * 20 18 17 31 31 H 1.09006 * 110.84409 * 207.67659 * 21 20 18 32 32 H 1.09002 * 111.02219 * 84.13561 * 21 20 18 33 33 H 1.09003 * 109.83181 * 261.84483 * 22 21 20 34 34 H 1.08996 * 109.83049 * 140.87249 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0835 1.2704 -0.5358 5 6 1.6427 2.2811 0.6896 6 7 0.5612 2.1515 1.4245 7 14 2.4987 3.9372 0.5715 8 1 1.9341 4.7064 -0.5664 9 1 2.2898 4.6934 1.8324 10 1 3.9529 3.7283 0.3547 11 6 2.1390 -1.1672 0.0005 12 8 1.5348 -2.2184 -0.0991 13 6 3.6072 -1.1699 0.1217 14 7 4.4186 -0.0778 0.1459 15 6 5.6483 -0.4808 0.2637 16 8 5.6715 -1.8199 0.3190 17 6 4.4080 -2.2659 0.2317 18 6 3.9613 -3.7050 0.2514 19 1 2.8858 -3.7645 0.4188 20 6 4.3401 -4.4040 -1.0786 21 6 4.4083 -5.8872 -0.6231 22 6 4.9432 -5.7626 0.8197 23 8 4.6655 -4.4318 1.2709 24 1 -0.3634 -0.0896 1.0237 25 1 -0.3633 0.9313 -0.4343 26 1 -0.3633 -0.8419 -0.5894 27 1 0.2075 2.9157 1.9061 28 1 6.5149 0.1620 0.3105 29 1 3.5662 -4.2597 -1.8325 30 1 5.3085 -4.0596 -1.4414 31 1 5.1012 -6.4528 -1.2462 32 1 3.4191 -6.3448 -0.6320 33 1 6.0186 -5.9404 0.8321 34 1 4.4406 -6.4840 1.4639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116071646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -39.049210 kcal Electronic energy + Delta-G solvation = -20718.498823 eV Core-core repulsion = 17426.154316 eV Total energy + Delta-G solvation = -3292.344507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.71722 -39.15413 -38.24501 -34.78665 -34.01122 -32.13589 -31.42384 -31.13907 -27.97864 -26.42711 -24.79852 -23.05670 -22.46205 -21.62899 -20.60933 -19.35588 -17.92713 -16.57384 -16.32253 -16.09788 -15.78785 -15.33882 -14.83634 -14.43836 -14.17746 -13.81956 -13.55623 -13.39469 -12.89324 -12.58359 -11.78339 -11.73502 -11.58903 -11.36838 -11.26340 -11.19946 -10.90907 -10.83805 -10.67335 -10.46470 -10.30958 -9.65633 -9.47705 -8.98775 -8.64538 -8.29016 -7.54413 -6.31318 -3.92670 1.72613 2.89074 3.14943 3.22047 3.26170 3.32373 3.93037 4.15504 4.41457 4.51556 4.54846 4.78649 4.88678 4.95157 5.17931 5.24303 5.37192 5.60101 5.70512 5.73207 5.91578 5.95283 5.98851 6.10492 6.27980 6.48106 6.64302 6.90607 6.96997 7.09084 7.29851 7.64120 7.88474 8.24187 8.55246 9.13091 9.48061 9.87974 10.73234 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.006178 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.440669 B = 4530.783355 C = 5181.760949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.412 5.412 3 C -0.314 4.314 4 H 0.122 0.878 5 C 0.036 3.964 6 N -0.875 5.875 7 Si 0.926 3.074 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.265 1.265 11 C 0.517 3.483 12 O -0.611 6.611 13 C 0.001 3.999 14 N -0.425 5.425 15 C 0.141 3.859 16 O -0.201 6.201 17 C -0.012 4.012 18 C 0.166 3.834 19 H 0.136 0.864 20 C -0.145 4.145 21 C -0.154 4.154 22 C 0.051 3.949 23 O -0.378 6.378 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.268 0.732 28 H 0.245 0.755 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.560 -9.000 -3.613 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.126 5.126 3 C -0.443 4.443 4 H 0.139 0.861 5 C -0.169 4.169 6 N -0.512 5.512 7 Si 0.753 3.247 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.189 1.189 11 C 0.306 3.694 12 O -0.500 6.500 13 C -0.121 4.121 14 N -0.154 5.154 15 C -0.086 4.086 16 O -0.088 6.088 17 C -0.068 4.068 18 C 0.109 3.891 19 H 0.153 0.847 20 C -0.183 4.183 21 C -0.192 4.192 22 C -0.026 4.026 23 O -0.297 6.297 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.260 0.740 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.982 -8.630 -3.376 12.231 hybrid contribution 0.754 0.528 0.084 0.925 sum 8.736 -8.102 -3.292 12.361 Atomic orbital electron populations 1.21356 0.80363 0.99649 1.00995 1.43451 1.05738 1.04837 1.58597 1.20323 1.07257 0.86349 1.30372 0.86067 1.25563 0.96266 1.00569 0.94509 1.69966 1.21564 1.31541 1.28161 0.85921 0.80201 0.81131 0.77442 1.20482 1.21094 1.18878 1.16837 0.83631 0.84300 0.84592 1.90557 1.68374 1.31388 1.59702 1.21710 0.96285 0.87088 1.06987 1.71420 0.99805 1.29651 1.14532 1.28242 0.98705 0.79029 1.02647 1.84267 1.30038 1.24935 1.69542 1.23271 0.80871 0.96339 1.06333 1.21801 0.98063 0.81942 0.87258 0.84689 1.23284 1.03164 0.94096 0.97746 1.23126 1.02623 0.97052 0.96357 1.23112 1.00119 0.84735 0.94599 1.88490 1.77557 1.24003 1.39683 0.92701 0.91522 0.94427 0.92158 0.73967 0.88854 0.90420 0.89965 0.90016 0.91506 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.99 8.71 59.84 0.52 3.51 16 2 N -0.41 -11.08 2.97 -123.46 -0.37 -11.45 16 3 C -0.31 -8.43 8.10 -14.99 -0.12 -8.56 16 4 H 0.12 3.21 5.69 -52.49 -0.30 2.92 16 5 C 0.04 0.94 5.18 -17.46 -0.09 0.85 16 6 N -0.87 -23.84 11.15 55.50 0.62 -23.22 16 7 Si 0.93 20.46 29.56 -169.99 -5.02 15.44 16 8 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.52 13.49 7.62 -12.56 -0.10 13.40 16 12 O -0.61 -16.03 14.24 5.23 0.07 -15.96 16 13 C 0.00 0.01 6.71 -83.03 -0.56 -0.54 16 14 N -0.43 -9.37 8.06 -11.49 -0.09 -9.46 16 15 C 0.14 2.42 13.19 51.96 0.69 3.10 16 16 O -0.20 -3.68 10.73 6.48 0.07 -3.62 16 17 C -0.01 -0.24 6.38 -35.05 -0.22 -0.47 16 18 C 0.17 3.01 3.67 -26.85 -0.10 2.91 16 19 H 0.14 2.73 5.91 -51.93 -0.31 2.42 16 20 C -0.15 -2.03 6.56 -24.48 -0.16 -2.19 16 21 C -0.15 -1.68 7.02 -24.79 -0.17 -1.85 16 22 C 0.05 0.63 7.79 37.88 0.30 0.92 16 23 O -0.38 -6.56 11.03 -35.23 -0.39 -6.95 16 24 H 0.05 1.43 7.73 -51.93 -0.40 1.03 16 25 H 0.07 1.66 7.29 -51.93 -0.38 1.28 16 26 H 0.04 0.88 7.50 -51.93 -0.39 0.49 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.24 2.72 8.06 -52.49 -0.42 2.29 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -32.21 289.22 -4.63 -36.84 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.86 Total: 2.93 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -0.02 Total: 11.08 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.16 Total: -44.13 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.24 Total: -26.52 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.21 -4.63 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116071646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.209 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds