Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 119.99913 * 2 1 4 4 H 1.07999 * 120.00296 * 214.94988 * 3 2 1 5 5 C 1.38993 * 120.00102 * 34.95041 * 3 2 1 6 6 N 1.31402 * 119.99745 * 5.19119 * 5 3 2 7 7 Si 1.86796 * 120.00336 * 185.19186 * 5 3 2 8 8 H 1.48499 * 109.47330 * 89.99678 * 7 5 3 9 9 H 1.48504 * 109.47322 * 209.99884 * 7 5 3 10 10 H 1.48501 * 109.46982 * 329.99676 * 7 5 3 11 11 C 1.34781 * 120.00566 * 179.97438 * 2 1 3 12 12 O 1.21652 * 119.99312 * 5.45088 * 11 2 1 13 13 C 1.47321 * 120.00228 * 185.45199 * 11 2 1 14 14 N 1.36074 * 126.45799 * 355.06614 * 13 11 2 15 15 C 1.29936 * 108.48416 * 179.97438 * 14 13 11 16 16 O 1.34048 * 109.26422 * 359.97438 * 15 14 13 17 17 C 1.34271 * 108.23227 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.53543 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.27855 * 165.65767 * 18 17 16 20 20 C 1.54950 * 110.30999 * 287.85625 * 18 17 16 21 21 C 1.55303 * 100.94153 * 155.35900 * 20 18 17 22 22 C 1.54380 * 102.25528 * 325.86460 * 21 20 18 23 23 O 1.43241 * 107.58923 * 21.35890 * 22 21 20 24 24 H 1.08998 * 109.47248 * 264.99646 * 1 2 3 25 25 H 1.08998 * 109.47105 * 25.00299 * 1 2 3 26 26 H 1.09001 * 109.46819 * 145.00308 * 1 2 3 27 27 H 0.97004 * 120.00382 * 179.97438 * 6 5 3 28 28 H 1.08000 * 125.36481 * 180.02562 * 15 14 13 29 29 H 1.09003 * 111.12097 * 273.27999 * 20 18 17 30 30 H 1.08997 * 111.12433 * 37.44047 * 20 18 17 31 31 H 1.09006 * 110.84409 * 207.67659 * 21 20 18 32 32 H 1.09002 * 111.02219 * 84.13561 * 21 20 18 33 33 H 1.09003 * 109.83181 * 261.84483 * 22 21 20 34 34 H 1.08996 * 109.83049 * 140.87249 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0835 1.2704 -0.5358 5 6 1.6427 2.2811 0.6896 6 7 0.5612 2.1515 1.4245 7 14 2.4987 3.9372 0.5715 8 1 1.9341 4.7064 -0.5664 9 1 2.2898 4.6934 1.8324 10 1 3.9529 3.7283 0.3547 11 6 2.1390 -1.1672 0.0005 12 8 1.5348 -2.2184 -0.0991 13 6 3.6072 -1.1699 0.1217 14 7 4.4186 -0.0778 0.1459 15 6 5.6483 -0.4808 0.2637 16 8 5.6715 -1.8199 0.3190 17 6 4.4080 -2.2659 0.2317 18 6 3.9613 -3.7050 0.2514 19 1 2.8858 -3.7645 0.4188 20 6 4.3401 -4.4040 -1.0786 21 6 4.4083 -5.8872 -0.6231 22 6 4.9432 -5.7626 0.8197 23 8 4.6655 -4.4318 1.2709 24 1 -0.3634 -0.0896 1.0237 25 1 -0.3633 0.9313 -0.4343 26 1 -0.3633 -0.8419 -0.5894 27 1 0.2075 2.9157 1.9061 28 1 6.5149 0.1620 0.3105 29 1 3.5662 -4.2597 -1.8325 30 1 5.3085 -4.0596 -1.4414 31 1 5.1012 -6.4528 -1.2462 32 1 3.4191 -6.3448 -0.6320 33 1 6.0186 -5.9404 0.8321 34 1 4.4406 -6.4840 1.4639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116071646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -62.811980 kcal Electronic energy + Delta-G solvation = -20719.529254 eV Core-core repulsion = 17426.154316 eV Total energy + Delta-G solvation = -3293.374938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.25639 -40.38597 -40.17763 -36.78735 -35.61094 -33.45089 -33.28105 -32.48785 -29.46326 -28.27817 -26.72809 -24.36322 -24.17269 -22.62020 -22.10097 -21.20959 -19.68172 -17.91045 -17.81469 -17.62601 -17.48547 -16.79306 -16.40718 -16.13827 -15.82948 -15.78149 -14.92670 -14.67902 -14.39977 -14.08615 -13.75258 -13.17335 -13.15981 -12.93586 -12.80224 -12.70429 -12.53000 -12.30595 -12.13344 -12.04810 -11.86430 -11.30781 -11.01473 -10.72412 -10.53969 -9.90990 -9.53954 -8.28896 -5.98277 0.14119 1.27963 1.46652 1.52398 1.61471 1.69347 2.31509 2.45135 2.78600 2.82935 3.18868 3.41605 3.50632 3.59699 3.94413 4.13444 4.20358 4.25982 4.35134 4.60021 4.66385 4.76448 4.77717 4.86615 4.89491 4.96564 5.00425 5.20948 5.21255 5.30712 5.66562 5.89136 5.91151 6.52943 6.69983 7.13006 7.48580 7.87163 8.76678 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.006178 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.440669 B = 4530.783355 C = 5181.760949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.434 5.434 3 C -0.329 4.329 4 H 0.123 0.877 5 C -0.010 4.010 6 N -0.909 5.909 7 Si 0.994 3.006 8 H -0.270 1.270 9 H -0.286 1.286 10 H -0.255 1.255 11 C 0.510 3.490 12 O -0.624 6.624 13 C -0.044 4.044 14 N -0.470 5.470 15 C 0.173 3.827 16 O -0.194 6.194 17 C 0.003 3.997 18 C 0.160 3.840 19 H 0.106 0.894 20 C -0.140 4.140 21 C -0.141 4.141 22 C 0.039 3.961 23 O -0.402 6.402 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.270 0.730 28 H 0.303 0.697 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.256 -9.485 -4.209 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.149 5.149 3 C -0.457 4.457 4 H 0.141 0.859 5 C -0.211 4.211 6 N -0.547 5.547 7 Si 0.817 3.183 8 H -0.196 1.196 9 H -0.211 1.211 10 H -0.178 1.178 11 C 0.300 3.700 12 O -0.514 6.514 13 C -0.164 4.164 14 N -0.198 5.198 15 C -0.055 4.055 16 O -0.080 6.080 17 C -0.054 4.054 18 C 0.103 3.897 19 H 0.123 0.877 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.036 4.036 23 O -0.323 6.323 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.318 0.682 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.668 -9.132 -3.984 14.597 hybrid contribution 0.011 0.535 0.298 0.613 sum 10.679 -8.597 -3.685 14.196 Atomic orbital electron populations 1.21174 0.80346 0.99693 0.99888 1.43691 1.06134 1.05379 1.59657 1.20534 1.07583 0.86612 1.30964 0.85942 1.26447 0.96833 1.03928 0.93882 1.70084 1.22943 1.32542 1.29155 0.84910 0.79515 0.76490 0.77413 1.19582 1.21134 1.17826 1.17327 0.85228 0.83927 0.83535 1.90523 1.69351 1.31686 1.59871 1.21439 0.95373 0.88945 1.10609 1.71256 1.01535 1.30027 1.17009 1.29455 0.98830 0.78781 0.98421 1.84315 1.28738 1.25644 1.69344 1.23593 0.81098 0.96824 1.03893 1.21698 0.96606 0.81534 0.89875 0.87692 1.23267 1.03286 0.95827 0.95394 1.23139 1.03948 0.95086 0.95686 1.23465 1.01764 0.82648 0.95751 1.88452 1.77342 1.26280 1.40190 0.94511 0.91928 0.93534 0.92085 0.68191 0.89194 0.89554 0.86593 0.89400 0.89436 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.89 8.71 127.77 1.11 8.01 16 2 N -0.43 -24.09 2.97 -662.75 -1.97 -26.06 16 3 C -0.33 -17.96 8.10 84.08 0.68 -17.28 16 4 H 0.12 6.55 5.69 -2.91 -0.02 6.53 16 5 C -0.01 -0.52 5.18 84.94 0.44 -0.08 16 6 N -0.91 -50.66 11.15 21.67 0.24 -50.42 16 7 Si 0.99 41.79 29.56 68.60 2.03 43.82 16 8 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 9 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 11 C 0.51 27.47 7.62 86.63 0.66 28.13 16 12 O -0.62 -34.01 14.24 -4.20 -0.06 -34.07 16 13 C -0.04 -2.09 6.71 40.40 0.27 -1.82 16 14 N -0.47 -20.32 8.06 -305.17 -2.46 -22.78 16 15 C 0.17 5.42 13.19 130.52 1.72 7.14 16 16 O -0.19 -6.65 10.73 0.27 0.00 -6.65 16 17 C 0.00 0.13 6.38 25.21 0.16 0.29 16 18 C 0.16 5.75 3.67 30.51 0.11 5.86 16 19 H 0.11 4.39 5.91 -2.38 -0.01 4.38 16 20 C -0.14 -3.68 6.56 32.05 0.21 -3.47 16 21 C -0.14 -2.65 7.02 31.85 0.22 -2.43 16 22 C 0.04 0.86 7.79 72.45 0.56 1.43 16 23 O -0.40 -13.52 11.03 -148.98 -1.64 -15.16 16 24 H 0.04 2.00 7.73 -2.39 -0.02 1.98 16 25 H 0.06 3.24 7.29 -2.39 -0.02 3.22 16 26 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.30 5.18 8.06 -2.91 -0.02 5.15 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 31 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -72.39 289.22 3.42 -68.96 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.13 Total: 16.57 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 6.16 Total: 25.78 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -4.19 Total: -99.26 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.70 Total: -55.87 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.39 3.42 -68.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116071646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.153 kcal (2) G-P(sol) polarization free energy of solvation -72.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds