Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34772 * 117.00173 * 2 1 4 4 O 1.21521 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.47317 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.40016 * 120.59386 * 354.11140 * 5 3 2 7 7 C 1.38756 * 118.31657 * 180.02562 * 6 5 3 8 8 O 1.35983 * 120.29410 * 179.97438 * 7 6 5 9 9 C 1.42896 * 116.99722 * 180.02562 * 8 7 6 10 10 C 1.38947 * 119.41021 * 359.97438 * 7 6 5 11 11 N 1.31757 * 121.15651 * 0.02562 * 10 7 6 12 12 C 1.32457 * 121.84985 * 359.97438 * 11 10 7 13 13 N 1.38289 * 119.77813 * 180.02562 * 12 11 10 14 14 C 1.46505 * 119.99753 * 94.07436 * 13 12 11 15 15 C 1.36863 * 120.00249 * 274.07951 * 13 12 11 16 16 H 1.08000 * 120.00045 * 6.78848 * 15 13 12 17 17 C 1.38854 * 119.99801 * 186.79527 * 15 13 12 18 18 N 1.31530 * 120.00384 * 6.99044 * 17 15 13 19 19 Si 1.86800 * 119.99863 * 187.00079 * 17 15 13 20 20 H 1.48503 * 109.47112 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47733 * 119.99694 * 19 17 15 22 22 H 1.48505 * 109.46882 * 239.99521 * 19 17 15 23 23 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47188 * 299.99922 * 1 2 3 25 25 H 1.08998 * 109.47278 * 59.99958 * 1 2 3 26 26 H 1.08002 * 120.83663 * 0.04208 * 6 5 3 27 27 H 1.09002 * 109.47259 * 59.99877 * 9 8 7 28 28 H 1.08998 * 109.47159 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47323 * 299.99690 * 9 8 7 30 30 H 1.07996 * 119.42004 * 179.72299 * 10 7 6 31 31 H 1.08993 * 109.47105 * 354.31666 * 14 13 12 32 32 H 1.08996 * 109.46933 * 114.31931 * 14 13 12 33 33 H 1.08999 * 109.46980 * 234.31839 * 14 13 12 34 34 H 0.97001 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5350 1.2779 0.0006 6 6 4.3093 0.1180 0.1248 7 6 5.6910 0.2453 0.1202 8 8 6.4817 -0.8546 0.2388 9 6 7.8947 -0.6422 0.2262 10 6 6.2595 1.5068 -0.0067 11 7 5.5096 2.5840 -0.1223 12 6 4.1867 2.5178 -0.1236 13 7 3.4412 3.6759 -0.2480 14 6 2.9783 4.1108 -1.5682 15 6 3.1361 4.4159 0.8622 16 1 3.5671 4.1581 1.8182 17 6 2.2721 5.4981 0.7592 18 7 1.6403 5.7301 -0.3708 19 14 2.0074 6.6246 2.2256 20 1 2.8281 6.1503 3.3687 21 1 2.4108 8.0079 1.8664 22 1 0.5724 6.6109 2.6076 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.8429 -0.8513 0.2214 27 1 8.1717 0.0085 1.0556 28 1 8.4069 -1.5989 0.3287 29 1 8.1834 -0.1742 -0.7148 30 1 7.3348 1.6066 -0.0058 31 1 3.3989 3.4588 -2.3336 32 1 1.8901 4.0608 -1.6062 33 1 3.3014 5.1363 -1.7469 34 1 1.0371 6.4863 -0.4428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798947.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -27.470262 kcal Electronic energy + Delta-G solvation = -20677.369877 eV Core-core repulsion = 17385.527470 eV Total energy + Delta-G solvation = -3291.842407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.39474 -39.32832 -37.88666 -35.74134 -35.01987 -32.25121 -31.39769 -29.06053 -27.43505 -27.11080 -26.00222 -23.87506 -23.75105 -21.24861 -20.43762 -18.08595 -17.32898 -16.97007 -16.18456 -15.97659 -15.74990 -15.63413 -15.56766 -14.31901 -14.05812 -13.60499 -13.39204 -12.99217 -12.72470 -12.54234 -12.38778 -11.89809 -11.86647 -11.60753 -11.28760 -11.05068 -10.76826 -10.49534 -10.20281 -10.12266 -9.92783 -9.68922 -9.25808 -9.09039 -8.57577 -7.85924 -7.11154 -5.69622 -3.12499 1.06595 1.75151 3.16400 3.28756 3.39638 3.42673 3.45027 3.47958 4.30075 4.38681 4.77291 4.92229 5.05205 5.15385 5.24862 5.37463 5.44226 5.46694 5.55269 5.57277 5.61698 5.79476 5.97430 6.15868 6.40770 6.57921 6.76732 6.98813 7.41774 7.51728 7.75426 7.92759 8.32810 8.54305 8.61969 9.16486 9.83529 10.15228 11.29332 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.007515 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.638108 B = 3724.745408 C = 4745.805890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.373 6.373 3 C 0.489 3.511 4 O -0.428 6.428 5 C -0.157 4.157 6 C -0.053 4.053 7 C 0.024 3.976 8 O -0.317 6.317 9 C 0.027 3.973 10 C 0.061 3.939 11 N -0.471 5.471 12 C 0.428 3.572 13 N -0.530 5.530 14 C 0.173 3.827 15 C -0.235 4.235 16 H 0.074 0.926 17 C 0.012 3.988 18 N -0.897 5.897 19 Si 0.915 3.085 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.288 1.288 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.145 0.855 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.151 0.849 31 H -0.010 1.010 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -13.114 -0.394 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.292 6.292 3 C 0.329 3.671 4 O -0.309 6.309 5 C -0.166 4.166 6 C -0.080 4.080 7 C -0.023 4.023 8 O -0.230 6.230 9 C -0.068 4.068 10 C -0.102 4.102 11 N -0.184 5.184 12 C 0.197 3.803 13 N -0.247 5.247 14 C 0.030 3.970 15 C -0.362 4.362 16 H 0.092 0.908 17 C -0.187 4.187 18 N -0.541 5.541 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.215 1.215 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.162 0.838 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.009 0.991 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.495 -11.900 -0.520 13.118 hybrid contribution -0.400 -0.039 0.809 0.903 sum 5.095 -11.939 0.289 12.983 Atomic orbital electron populations 1.23089 0.77110 1.02547 1.02507 1.86515 1.22669 1.34024 1.85960 1.20737 0.88609 0.81647 0.76070 1.91112 1.65241 1.34269 1.40314 1.20659 0.90672 0.95283 1.10034 1.21007 0.90185 0.99060 0.97710 1.19755 0.91198 0.87208 1.04143 1.86033 1.17696 1.30104 1.89200 1.23008 0.79101 1.03318 1.01397 1.22936 1.00139 0.87292 0.99808 1.68022 1.07590 1.30930 1.11838 1.18157 0.86430 0.86983 0.88699 1.41178 1.55174 1.21970 1.06345 1.21187 1.00146 0.95732 0.79888 1.19105 1.22119 1.08170 0.86851 0.90787 1.24813 0.97662 0.98766 0.97430 1.70166 1.29980 1.29626 1.24336 0.86029 0.77615 0.80422 0.81523 1.20351 1.21409 1.21521 0.88926 0.92193 0.92206 0.83760 0.92704 0.88489 0.92728 0.83150 0.99143 0.91079 0.93613 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.57 101.05 1.07 1.66 16 2 O -0.37 -6.58 9.90 -40.69 -0.40 -6.99 16 3 C 0.49 10.53 7.88 34.42 0.27 10.80 16 4 O -0.43 -10.84 13.19 -19.28 -0.25 -11.09 16 5 C -0.16 -3.32 5.91 -104.64 -0.62 -3.94 16 6 C -0.05 -0.92 9.68 -38.72 -0.37 -1.29 16 7 C 0.02 0.39 6.70 -39.13 -0.26 0.13 16 8 O -0.32 -4.33 10.51 -19.69 -0.21 -4.53 16 9 C 0.03 0.25 9.82 101.05 0.99 1.24 16 10 C 0.06 1.04 10.21 -17.32 -0.18 0.86 16 11 N -0.47 -10.27 10.37 -12.04 -0.12 -10.39 16 12 C 0.43 10.18 5.94 -155.10 -0.92 9.26 16 13 N -0.53 -14.28 1.63 -122.17 -0.20 -14.48 16 14 C 0.17 4.59 8.35 59.85 0.50 5.09 16 15 C -0.24 -6.76 9.03 -15.08 -0.14 -6.89 16 16 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 17 C 0.01 0.33 5.39 -17.45 -0.09 0.23 16 18 N -0.90 -26.20 9.60 55.49 0.53 -25.67 16 19 Si 0.91 22.50 29.56 -169.99 -5.02 17.47 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.14 2.19 7.71 -52.49 -0.40 1.78 16 27 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.15 2.00 6.28 -52.49 -0.33 1.67 16 31 H -0.01 -0.25 7.90 -51.93 -0.41 -0.66 16 32 H 0.07 2.03 6.18 -51.93 -0.32 1.71 16 33 H 0.05 1.27 7.35 -51.93 -0.38 0.89 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -33.27 295.00 -4.87 -38.14 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -3.88 Total: -4.04 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 0.25 Total: 17.15 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.21 Total: -50.55 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.86 Total: -22.61 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.27 -4.87 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798947.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.665 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds