Wall clock time and date at job start Mon Mar 30 2020 01:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34772 * 117.00173 * 2 1 4 4 O 1.21521 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.47317 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.40016 * 120.59386 * 354.11140 * 5 3 2 7 7 C 1.38756 * 118.31657 * 180.02562 * 6 5 3 8 8 O 1.35983 * 120.29410 * 179.97438 * 7 6 5 9 9 C 1.42896 * 116.99722 * 180.02562 * 8 7 6 10 10 C 1.38947 * 119.41021 * 359.97438 * 7 6 5 11 11 N 1.31757 * 121.15651 * 0.02562 * 10 7 6 12 12 C 1.32457 * 121.84985 * 359.97438 * 11 10 7 13 13 N 1.38289 * 119.77813 * 180.02562 * 12 11 10 14 14 C 1.46505 * 119.99753 * 94.07436 * 13 12 11 15 15 C 1.36863 * 120.00249 * 274.07951 * 13 12 11 16 16 H 1.08000 * 120.00045 * 6.78848 * 15 13 12 17 17 C 1.38854 * 119.99801 * 186.79527 * 15 13 12 18 18 N 1.31530 * 120.00384 * 6.99044 * 17 15 13 19 19 Si 1.86800 * 119.99863 * 187.00079 * 17 15 13 20 20 H 1.48503 * 109.47112 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47733 * 119.99694 * 19 17 15 22 22 H 1.48505 * 109.46882 * 239.99521 * 19 17 15 23 23 H 1.09003 * 109.47216 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47188 * 299.99922 * 1 2 3 25 25 H 1.08998 * 109.47278 * 59.99958 * 1 2 3 26 26 H 1.08002 * 120.83663 * 0.04208 * 6 5 3 27 27 H 1.09002 * 109.47259 * 59.99877 * 9 8 7 28 28 H 1.08998 * 109.47159 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47323 * 299.99690 * 9 8 7 30 30 H 1.07996 * 119.42004 * 179.72299 * 10 7 6 31 31 H 1.08993 * 109.47105 * 354.31666 * 14 13 12 32 32 H 1.08996 * 109.46933 * 114.31931 * 14 13 12 33 33 H 1.08999 * 109.46980 * 234.31839 * 14 13 12 34 34 H 0.97001 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5350 1.2779 0.0006 6 6 4.3093 0.1180 0.1248 7 6 5.6910 0.2453 0.1202 8 8 6.4817 -0.8546 0.2388 9 6 7.8947 -0.6422 0.2262 10 6 6.2595 1.5068 -0.0067 11 7 5.5096 2.5840 -0.1223 12 6 4.1867 2.5178 -0.1236 13 7 3.4412 3.6759 -0.2480 14 6 2.9783 4.1108 -1.5682 15 6 3.1361 4.4159 0.8622 16 1 3.5671 4.1581 1.8182 17 6 2.2721 5.4981 0.7592 18 7 1.6403 5.7301 -0.3708 19 14 2.0074 6.6246 2.2256 20 1 2.8281 6.1503 3.3687 21 1 2.4108 8.0079 1.8664 22 1 0.5724 6.6109 2.6076 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.8429 -0.8513 0.2214 27 1 8.1717 0.0085 1.0556 28 1 8.4069 -1.5989 0.3287 29 1 8.1834 -0.1742 -0.7148 30 1 7.3348 1.6066 -0.0058 31 1 3.3989 3.4588 -2.3336 32 1 1.8901 4.0608 -1.6062 33 1 3.3014 5.1363 -1.7469 34 1 1.0371 6.4863 -0.4428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798947.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:46 Heat of formation + Delta-G solvation = -49.881712 kcal Electronic energy + Delta-G solvation = -20678.341710 eV Core-core repulsion = 17385.527470 eV Total energy + Delta-G solvation = -3292.814240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92643 -40.81069 -39.28725 -37.38363 -36.80998 -33.79215 -33.32394 -30.58396 -28.74737 -28.16611 -28.03404 -25.55272 -25.27925 -22.99523 -21.94479 -19.45107 -19.22235 -18.45090 -17.82992 -17.63888 -17.24081 -17.07020 -16.68488 -16.14868 -15.42978 -15.26253 -14.98132 -14.47914 -14.25331 -13.96443 -13.92434 -13.78176 -13.14018 -12.88513 -12.76198 -12.72922 -12.58012 -12.24168 -12.05938 -11.97650 -11.65579 -11.41691 -10.84042 -10.79467 -10.49577 -9.30501 -9.09889 -7.75939 -5.26902 -0.45306 0.24206 1.43213 1.45014 1.54842 1.67292 1.72768 2.25844 2.44716 2.76764 3.09135 3.34114 3.55912 3.78109 3.99631 4.07719 4.31718 4.37838 4.40935 4.49353 4.50951 4.53636 4.71800 4.73850 4.84728 4.95130 5.19647 5.37965 5.42093 5.58051 5.82128 6.22511 6.31419 6.92791 6.99451 7.12730 7.84801 8.17511 9.23289 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.007515 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.638108 B = 3724.745408 C = 4745.805890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.493 3.507 4 O -0.474 6.474 5 C -0.166 4.166 6 C -0.048 4.048 7 C 0.056 3.944 8 O -0.316 6.316 9 C 0.011 3.989 10 C 0.067 3.933 11 N -0.499 5.499 12 C 0.399 3.601 13 N -0.554 5.554 14 C 0.199 3.801 15 C -0.247 4.247 16 H 0.062 0.938 17 C -0.041 4.041 18 N -0.930 5.930 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.290 1.290 23 H 0.142 0.858 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.173 0.827 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.004 0.996 32 H 0.043 0.957 33 H 0.017 0.983 34 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -16.292 0.323 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.334 3.666 4 O -0.359 6.359 5 C -0.173 4.173 6 C -0.074 4.074 7 C 0.008 3.992 8 O -0.228 6.228 9 C -0.083 4.083 10 C -0.094 4.094 11 N -0.212 5.212 12 C 0.171 3.829 13 N -0.274 5.274 14 C 0.056 3.944 15 C -0.375 4.375 16 H 0.080 0.920 17 C -0.235 4.235 18 N -0.577 5.577 19 Si 0.802 3.198 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.217 1.217 23 H 0.160 0.840 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.190 0.810 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.087 0.913 30 H 0.210 0.790 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.666 -15.191 0.211 17.017 hybrid contribution -0.795 0.468 0.626 1.115 sum 6.872 -14.723 0.837 16.269 Atomic orbital electron populations 1.23463 0.74892 1.05556 1.01910 1.86495 1.24707 1.31660 1.85056 1.20948 0.88960 0.81976 0.74673 1.91112 1.66283 1.36048 1.42429 1.20666 0.90979 0.95451 1.10245 1.21217 0.90775 0.98780 0.96655 1.19748 0.91189 0.87794 1.00471 1.86081 1.20040 1.28593 1.88132 1.23485 0.76242 1.05872 1.02692 1.23591 1.01675 0.86485 0.97672 1.67892 1.07127 1.33259 1.12966 1.18342 0.87024 0.86842 0.90725 1.40998 1.57490 1.23455 1.05436 1.20694 0.98168 0.94546 0.81004 1.19124 1.22690 1.08204 0.87511 0.92026 1.25532 0.97746 1.00333 0.99908 1.70336 1.31289 1.30223 1.25857 0.85115 0.77152 0.78652 0.78906 1.19677 1.21050 1.21725 0.83969 0.92942 0.92827 0.80967 0.91500 0.85372 0.91294 0.78982 0.97704 0.93889 0.96453 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.57 113.37 1.20 2.13 16 2 O -0.36 -12.20 9.90 -56.83 -0.56 -12.77 16 3 C 0.49 21.29 7.88 70.21 0.55 21.84 16 4 O -0.47 -24.93 13.19 19.77 0.26 -24.67 16 5 C -0.17 -6.88 5.91 -19.88 -0.12 -7.00 16 6 C -0.05 -1.51 9.68 22.83 0.22 -1.29 16 7 C 0.06 1.57 6.70 22.56 0.15 1.72 16 8 O -0.32 -6.93 10.51 -93.36 -0.98 -7.91 16 9 C 0.01 0.14 9.82 113.37 1.11 1.25 16 10 C 0.07 2.06 10.21 84.87 0.87 2.92 16 11 N -0.50 -21.31 10.37 -192.00 -1.99 -23.30 16 12 C 0.40 19.12 5.94 133.66 0.79 19.91 16 13 N -0.55 -31.05 1.63 -540.45 -0.88 -31.94 16 14 C 0.20 11.17 8.35 127.77 1.07 12.24 16 15 C -0.25 -14.82 9.03 84.06 0.76 -14.06 16 16 H 0.06 3.71 7.84 -2.91 -0.02 3.68 16 17 C -0.04 -2.43 5.39 84.89 0.46 -1.97 16 18 N -0.93 -57.48 9.60 21.65 0.21 -57.27 16 19 Si 0.97 48.08 29.56 68.60 2.03 50.10 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.17 4.49 7.71 -2.91 -0.02 4.47 16 27 H 0.07 0.75 7.67 -2.39 -0.02 0.73 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 30 H 0.19 4.17 6.28 -2.91 -0.02 4.15 16 31 H 0.00 0.22 7.90 -2.39 -0.02 0.21 16 32 H 0.04 2.62 6.18 -2.39 -0.01 2.60 16 33 H 0.02 1.01 7.35 -2.39 -0.02 0.99 16 34 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.32 295.00 6.26 -71.06 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.12 Total: -1.02 kcal Atomic # 6 Polarization: 30.64 SS G_CDS: 7.06 Total: 37.70 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -2.67 Total: -112.50 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.28 Total: -45.34 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -77.32 6.26 -71.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798947.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.181 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds