Wall clock time and date at job start Mon Mar 30 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36013 * 116.99947 * 2 1 4 4 C 1.38486 * 120.08119 * 0.02562 * 3 2 1 5 5 C 1.38304 * 120.01954 * 179.70807 * 4 3 2 6 6 C 1.38272 * 120.19201 * 0.54635 * 5 4 3 7 7 C 1.50703 * 119.91761 * 179.72784 * 6 5 4 8 8 C 1.52996 * 109.46946 * 269.72814 * 7 6 5 9 9 C 1.52997 * 109.46947 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47216 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 119.99848 * 14 12 10 17 17 H 1.48501 * 109.47057 * 239.99829 * 14 12 10 18 18 C 1.38203 * 120.16354 * 359.45388 * 6 5 4 19 19 C 1.38783 * 119.97527 * 0.27256 * 18 6 5 20 20 S 1.76201 * 120.09719 * 179.97438 * 19 18 6 21 21 C 1.81407 * 102.99734 * 0.02562 * 20 19 18 22 22 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46991 * 299.99970 * 1 2 3 24 24 H 1.09000 * 109.46945 * 59.99893 * 1 2 3 25 25 H 1.07999 * 119.98857 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.90365 * 180.27259 * 5 4 3 27 27 H 1.08992 * 109.46894 * 149.72533 * 7 6 5 28 28 H 1.08996 * 109.46805 * 29.72683 * 7 6 5 29 29 H 1.09001 * 109.47372 * 60.00128 * 8 7 6 30 30 H 1.09004 * 109.47108 * 299.99872 * 8 7 6 31 31 H 1.09001 * 109.46832 * 59.99979 * 9 8 7 32 32 H 1.09000 * 109.47611 * 300.00276 * 9 8 7 33 33 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.01157 * 180.25457 * 18 6 5 35 35 H 1.08994 * 109.46740 * 299.99942 * 21 20 19 36 36 H 1.09003 * 109.46767 * 60.00140 * 21 20 19 37 37 H 1.08999 * 109.46849 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2938 2.3744 0.0005 5 6 1.9230 3.6060 0.0066 6 6 3.3037 3.6816 0.0008 7 6 3.9828 5.0269 0.0013 8 6 4.2124 5.4828 -1.4410 9 6 4.9013 6.8489 -1.4405 10 6 5.1281 7.2977 -2.8612 11 1 4.8121 6.6713 -3.6822 12 6 5.7390 8.5078 -3.1127 13 7 6.1244 9.2702 -2.1127 14 14 6.0195 9.0643 -4.8736 15 1 5.4994 8.0335 -5.8074 16 1 5.3089 10.3474 -5.1064 17 1 7.4737 9.2544 -5.1070 18 6 4.0624 2.5264 0.0003 19 6 3.4382 1.2869 -0.0002 20 16 4.4023 -0.1879 -0.0016 21 6 6.1051 0.4378 -0.0013 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2153 2.3192 0.0005 26 1 1.3342 4.5114 0.0115 27 1 4.9410 4.9499 0.5150 28 1 3.3521 5.7520 0.5155 29 1 3.2541 5.5597 -1.9547 30 1 4.8432 4.7575 -1.9552 31 1 5.8596 6.7723 -0.9267 32 1 4.2703 7.5739 -0.9264 33 1 6.5538 10.1218 -2.2897 34 1 5.1406 2.5883 -0.0001 35 1 6.2687 1.0461 -0.8907 36 1 6.2690 1.0446 0.8893 37 1 6.8005 -0.4015 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:58 Heat of formation + Delta-G solvation = -35.808798 kcal Electronic energy + Delta-G solvation = -17260.191427 eV Core-core repulsion = 14514.280648 eV Total energy + Delta-G solvation = -2745.910778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11148 -37.80633 -34.48589 -32.45733 -31.38353 -30.06091 -28.99440 -27.62302 -26.20679 -23.49782 -22.84555 -21.17681 -20.05385 -18.33502 -16.84691 -16.33141 -16.10571 -15.84511 -14.78545 -14.51673 -14.43007 -14.21125 -13.85235 -13.81378 -13.37309 -12.99051 -12.55458 -12.46567 -12.16412 -12.03804 -11.58353 -11.31223 -11.10464 -11.01234 -10.77926 -10.57365 -10.49535 -10.15875 -9.72772 -9.63542 -9.32213 -9.07164 -8.34713 -8.23049 -7.21682 -5.99673 -4.01777 1.23176 1.45668 1.54475 2.44538 3.18829 3.30981 3.38510 3.43094 3.71378 4.46579 4.74973 4.85447 4.99410 5.00232 5.03454 5.06598 5.19972 5.31829 5.36093 5.36311 5.52101 5.60468 5.65042 5.96696 6.04549 6.12031 6.31038 6.35139 6.54529 6.77380 6.89477 6.90343 7.13527 7.29083 7.68775 7.82963 8.00907 8.44039 9.05758 9.62409 11.11634 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.003787 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.224690 B = 7392.864636 C = 7931.272737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.129 3.871 4 C -0.188 4.188 5 C -0.083 4.083 6 C -0.079 4.079 7 C -0.081 4.081 8 C -0.103 4.103 9 C 0.020 3.980 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.095 4.095 19 C -0.115 4.115 20 S -0.105 6.105 21 C -0.151 4.151 22 H 0.098 0.902 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -18.161 6.734 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.079 3.921 4 C -0.208 4.208 5 C -0.104 4.104 6 C -0.081 4.081 7 C -0.119 4.119 8 C -0.140 4.140 9 C -0.017 4.017 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.119 4.119 19 C -0.228 4.228 20 S 0.136 5.864 21 C -0.320 4.320 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.140 -19.417 6.768 22.115 hybrid contribution 0.313 1.958 -0.987 2.215 sum -7.827 -17.459 5.781 19.988 Atomic orbital electron populations 1.23030 0.78619 1.03733 1.01308 1.86112 1.21028 1.26451 1.88857 1.18274 0.90134 0.84623 0.99082 1.21105 0.99676 0.91925 1.08142 1.20947 0.94175 0.97003 0.98247 1.20025 0.93458 0.95674 0.98985 1.20759 0.99693 0.91419 1.00015 1.21630 1.00347 0.99742 0.92320 1.19130 0.95417 0.90194 0.96975 1.21311 1.38308 1.03483 0.92643 0.92689 1.25026 0.95734 0.96753 0.96984 1.69979 1.41139 1.11930 1.30527 0.86560 0.77840 0.78607 0.85159 1.19741 1.21005 1.21017 1.20942 0.99859 0.90128 1.00952 1.20884 0.93366 0.97220 1.11336 1.85436 0.99619 1.08335 1.93055 1.23719 0.96330 1.05952 1.05950 0.88381 0.92756 0.92666 0.85248 0.85372 0.91490 0.91228 0.93283 0.93431 0.96623 0.96566 0.93093 0.85170 0.89539 0.89781 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.01 9.87 -19.78 -0.20 -4.20 16 3 C 0.13 1.81 6.69 -39.07 -0.26 1.55 16 4 C -0.19 -2.41 9.04 -39.47 -0.36 -2.77 16 5 C -0.08 -1.16 9.69 -39.54 -0.38 -1.55 16 6 C -0.08 -1.22 5.13 -104.62 -0.54 -1.76 16 7 C -0.08 -1.38 5.34 -27.88 -0.15 -1.52 16 8 C -0.10 -2.12 5.13 -26.73 -0.14 -2.26 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.10 -1.41 9.01 -39.39 -0.35 -1.76 16 19 C -0.12 -1.68 6.12 -38.96 -0.24 -1.92 16 20 S -0.11 -1.36 22.05 -107.50 -2.37 -3.73 16 21 C -0.15 -1.50 9.15 101.05 0.92 -0.57 16 22 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 26 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.13 1.76 5.88 -52.49 -0.31 1.45 16 35 H 0.09 0.87 7.75 -51.93 -0.40 0.47 16 36 H 0.08 0.79 7.75 -51.92 -0.40 0.38 16 37 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -31.86 322.84 -8.62 -40.48 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.58 Total: -3.30 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.05 Total: -24.58 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.37 Total: -3.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.86 -8.62 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.671 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds