Wall clock time and date at job start Mon Mar 30 2020 00:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33692 * 126.27036 * 2 1 4 4 C 1.30622 * 108.99805 * 180.02562 * 3 2 1 5 5 O 1.33666 * 109.14611 * 359.75250 * 4 3 2 6 6 C 1.35342 * 107.69163 * 0.39773 * 5 4 3 7 7 C 1.46715 * 126.64468 * 179.87754 * 6 5 4 8 8 O 1.21685 * 119.99898 * 179.68558 * 7 6 5 9 9 N 1.34770 * 120.00527 * 359.68311 * 7 6 5 10 10 C 1.47433 * 125.64428 * 359.95971 * 9 7 6 11 11 C 1.55393 * 104.87396 * 204.16622 * 10 9 7 12 12 C 1.55158 * 101.36604 * 323.02138 * 11 10 9 13 13 O 1.42905 * 110.71665 * 277.04214 * 12 11 10 14 14 C 1.50698 * 110.72071 * 153.94900 * 12 11 10 15 15 H 1.08000 * 120.00108 * 2.43313 * 14 12 11 16 16 C 1.37875 * 119.99880 * 182.43864 * 14 12 11 17 17 N 1.31516 * 120.00122 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00107 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47033 * 59.99945 * 18 16 14 20 20 H 1.48501 * 109.47466 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47176 * 300.00326 * 18 16 14 22 22 C 1.47023 * 125.65372 * 180.02562 * 9 7 6 23 23 H 1.08999 * 109.47100 * 269.97391 * 1 2 3 24 24 H 1.08998 * 109.47107 * 29.97789 * 1 2 3 25 25 H 1.09006 * 109.46841 * 149.97674 * 1 2 3 26 26 H 1.07994 * 125.42587 * 179.97438 * 4 3 2 27 27 H 1.08994 * 110.36621 * 323.00423 * 10 9 7 28 28 H 1.09005 * 110.36538 * 85.21633 * 10 9 7 29 29 H 1.09003 * 111.18887 * 204.98028 * 11 10 9 30 30 H 1.08998 * 111.02037 * 80.98017 * 11 10 9 31 31 H 0.96696 * 114.00036 * 177.55969 * 13 12 11 32 32 H 0.97000 * 119.99972 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.87979 * 59.49193 * 22 9 7 34 34 H 1.08999 * 110.00722 * 298.39314 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6900 -0.0006 5 8 3.5890 -0.6459 0.0045 6 6 2.3137 -1.0992 -0.0006 7 6 1.8828 -2.5016 -0.0003 8 8 0.6968 -2.7737 0.0005 9 7 2.8005 -3.4886 -0.0009 10 6 4.2630 -3.3020 -0.0028 11 6 4.8314 -4.6110 -0.6177 12 6 3.8625 -5.6708 -0.0299 13 8 4.2627 -6.0446 1.2900 14 6 3.7888 -6.8806 -0.9253 15 1 4.3991 -6.9321 -1.8149 16 6 2.9421 -7.9218 -0.6090 17 7 2.1992 -7.8593 0.4744 18 14 2.8501 -9.4212 -1.7193 19 1 4.1885 -10.0594 -1.8011 20 1 1.8723 -10.3903 -1.1625 21 1 2.4161 -9.0057 -3.0773 22 6 2.5092 -4.9297 -0.0013 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.4043 1.3445 -0.0011 27 1 4.5352 -2.4447 -0.6184 28 1 4.6297 -3.1689 1.0150 29 1 5.8542 -4.7902 -0.2864 30 1 4.7730 -4.5893 -1.7059 31 1 3.6687 -6.6772 1.7168 32 1 1.6033 -8.5917 0.6968 33 1 1.9253 -5.1896 -0.8843 34 1 1.9582 -5.1990 0.8999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326347805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:06 Heat of formation + Delta-G solvation = -58.484190 kcal Electronic energy + Delta-G solvation = -20606.977211 eV Core-core repulsion = 17313.789940 eV Total energy + Delta-G solvation = -3293.187271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.39460 -39.36770 -37.37190 -35.36109 -34.29248 -32.25509 -31.57925 -30.24711 -28.23796 -27.52960 -25.32231 -23.72619 -22.42611 -21.49748 -19.79397 -19.49844 -17.29934 -17.19901 -16.84329 -16.46576 -15.60206 -15.00048 -14.79508 -14.65105 -14.24832 -13.35765 -13.14880 -13.11279 -12.96762 -12.83780 -12.27761 -12.12061 -11.70617 -11.54952 -11.12139 -11.07914 -10.96979 -10.77612 -10.65593 -10.56028 -10.23390 -9.79104 -9.39804 -8.92740 -8.72659 -8.39927 -8.03046 -6.34287 -4.43276 0.93740 2.44821 2.55261 3.19535 3.25543 3.27161 3.38326 3.48863 4.02698 4.22938 4.76687 4.77714 4.94447 5.32272 5.37892 5.52963 5.69435 5.70631 5.75367 5.87253 5.94951 6.01591 6.13094 6.34385 6.41732 6.67120 6.75461 6.80062 7.16315 7.26871 7.53198 7.67482 7.91486 7.98670 8.40901 8.60221 9.24486 9.34111 10.73627 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033806 B = 0.005274 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.057645 B = 5308.004644 C = 5743.762335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.494 5.494 4 C 0.185 3.815 5 O -0.185 6.185 6 C -0.093 4.093 7 C 0.606 3.394 8 O -0.525 6.525 9 N -0.597 5.597 10 C 0.100 3.900 11 C -0.117 4.117 12 C 0.249 3.751 13 O -0.585 6.585 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.102 3.898 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.253 0.747 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.385 0.615 32 H 0.272 0.728 33 H 0.071 0.929 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 12.430 -0.751 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 N -0.224 5.224 4 C -0.040 4.040 5 O -0.071 6.071 6 C -0.149 4.149 7 C 0.392 3.608 8 O -0.404 6.404 9 N -0.328 5.328 10 C -0.023 4.023 11 C -0.154 4.154 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.019 4.019 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.269 0.731 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.181 13.190 -0.762 13.390 hybrid contribution -0.131 -1.653 -0.376 1.700 sum 2.050 11.536 -1.138 11.772 Atomic orbital electron populations 1.20354 0.85452 1.04173 1.03570 1.21995 0.98325 0.86340 0.99270 1.70300 1.01376 1.31590 1.19146 1.28254 0.97522 0.80000 0.98229 1.84636 1.29799 1.23895 1.68724 1.23219 0.81091 0.96563 1.13982 1.16022 0.85256 0.80755 0.78754 1.90832 1.15354 1.81561 1.52676 1.48717 1.06833 1.08168 1.69052 1.22541 0.79721 0.99072 1.00952 1.22848 0.99923 0.92809 0.99868 1.19494 0.86674 0.90959 0.82074 1.86098 1.55953 1.66647 1.30713 1.21472 1.24714 1.01949 1.09633 0.91461 1.25076 0.94135 0.98714 0.95290 1.69625 1.25618 1.33379 1.24809 0.86434 0.78060 0.81678 0.80600 1.19941 1.21017 1.19990 1.23170 1.01588 0.74716 1.02405 0.90233 0.90792 0.88580 0.73132 0.91266 0.91415 0.90221 0.90388 0.76416 0.91798 0.91020 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.87 36.01 0.36 -0.71 16 2 C 0.06 1.00 7.16 -82.46 -0.59 0.41 16 3 N -0.49 -6.89 11.26 -10.88 -0.12 -7.02 16 4 C 0.19 2.05 13.21 52.25 0.69 2.74 16 5 O -0.19 -2.62 8.07 4.42 0.04 -2.58 16 6 C -0.09 -1.58 6.96 -36.84 -0.26 -1.83 16 7 C 0.61 12.19 7.82 -12.84 -0.10 12.09 16 8 O -0.52 -11.63 15.12 5.20 0.08 -11.55 16 9 N -0.60 -12.31 3.33 -171.73 -0.57 -12.88 16 10 C 0.10 1.79 6.19 -2.26 -0.01 1.77 16 11 C -0.12 -2.28 6.26 -24.32 -0.15 -2.43 16 12 C 0.25 5.87 0.85 -89.94 -0.08 5.80 16 13 O -0.58 -14.42 13.08 -35.23 -0.46 -14.88 16 14 C -0.54 -13.77 8.11 -34.44 -0.28 -14.05 16 15 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 16 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 17 N -0.90 -23.32 10.96 55.43 0.61 -22.71 16 18 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.10 2.41 5.38 -3.06 -0.02 2.39 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 1.44 6.47 -51.93 -0.34 1.10 16 26 H 0.25 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.07 1.08 6.25 -51.93 -0.32 0.75 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 31 H 0.38 9.73 7.23 45.56 0.33 10.06 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.07 1.82 7.82 -51.93 -0.41 1.42 16 34 H 0.07 1.80 7.99 -51.93 -0.42 1.39 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -29.48 290.25 -4.84 -34.32 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.23 Total: 10.00 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.53 Total: 7.89 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.09 Total: -42.61 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.35 Total: -29.01 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.48 -4.84 -34.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326347805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.162 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds