Wall clock time and date at job start Mon Mar 30 2020 00:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52462 * 2 1 4 4 C 1.34054 * 108.22471 * 179.97438 * 3 2 1 5 5 N 1.29936 * 109.24429 * 0.02562 * 4 3 2 6 6 C 1.36070 * 108.47282 * 0.02562 * 5 4 3 7 7 C 1.47422 * 126.44261 * 180.02562 * 6 5 4 8 8 O 1.21610 * 119.99870 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00406 * 359.96724 * 7 6 5 10 10 C 1.47428 * 125.64364 * 0.02878 * 9 7 6 11 11 C 1.54918 * 104.83032 * 204.08975 * 10 9 7 12 12 C 1.55157 * 101.58026 * 322.99027 * 11 10 9 13 13 O 1.42894 * 110.72161 * 277.13885 * 12 11 10 14 14 C 1.50699 * 110.71644 * 154.04201 * 12 11 10 15 15 H 1.07991 * 120.00239 * 359.97438 * 14 12 11 16 16 C 1.37882 * 119.99751 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99875 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00015 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46981 * 89.99936 * 18 16 14 20 20 H 1.48499 * 109.47158 * 210.00005 * 18 16 14 21 21 H 1.48502 * 109.47367 * 330.00298 * 18 16 14 22 22 C 1.47019 * 125.65340 * 179.71641 * 9 7 6 23 23 H 1.09003 * 109.46878 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47125 * 120.02271 * 1 2 3 25 25 H 1.08998 * 109.47145 * 240.02124 * 1 2 3 26 26 H 1.08001 * 125.37615 * 180.02562 * 4 3 2 27 27 H 1.09003 * 110.37083 * 322.92694 * 10 9 7 28 28 H 1.08997 * 110.36902 * 85.14556 * 10 9 7 29 29 H 1.08997 * 111.00447 * 81.06556 * 11 10 9 30 30 H 1.08999 * 110.99992 * 204.92136 * 11 10 9 31 31 H 0.96705 * 113.99998 * 179.97438 * 13 12 11 32 32 H 0.96998 * 119.99648 * 180.02562 * 17 16 14 33 33 H 1.08999 * 109.88364 * 298.40219 * 22 9 7 34 34 H 1.09002 * 109.87687 * 59.56287 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6579 0.0006 5 7 3.6002 -0.6413 0.0004 6 6 2.3169 -1.0936 -0.0009 7 6 1.8853 -2.5032 -0.0010 8 8 0.7002 -2.7762 -0.0018 9 7 2.8039 -3.4894 -0.0004 10 6 4.2662 -3.3014 0.0010 11 6 4.8344 -4.6066 -0.6101 12 6 3.8680 -5.6706 -0.0257 13 8 4.2655 -6.0433 1.2953 14 6 3.8020 -6.8803 -0.9219 15 1 4.3853 -6.9119 -1.8302 16 6 2.9960 -7.9464 -0.5827 17 7 2.2845 -7.9072 0.5227 18 14 2.9136 -9.4456 -1.6939 19 1 3.9546 -10.4226 -1.2850 20 1 1.5729 -10.0737 -1.5791 21 1 3.1479 -9.0325 -3.1009 22 6 2.5139 -4.9307 0.0054 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5142 -0.8898 25 1 -0.3633 -0.5135 0.8902 26 1 4.4489 1.2977 0.0011 27 1 4.5391 -2.4442 -0.6146 28 1 4.6305 -3.1675 1.0195 29 1 4.7794 -4.5847 -1.6985 30 1 5.8568 -4.7818 -0.2755 31 1 3.6934 -6.7062 1.7058 32 1 1.7178 -8.6574 0.7615 33 1 1.9656 -5.1948 0.9097 34 1 1.9290 -5.1946 -0.8757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326420362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:39 Heat of formation + Delta-G solvation = -56.083963 kcal Electronic energy + Delta-G solvation = -20548.627119 eV Core-core repulsion = 17255.543929 eV Total energy + Delta-G solvation = -3293.083190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.38929 -39.21586 -37.17082 -34.86257 -34.13865 -32.35138 -32.13906 -30.06788 -27.99664 -27.25340 -25.29948 -23.64775 -22.24837 -21.61560 -19.58978 -19.27765 -17.26722 -17.12960 -16.86077 -16.03732 -15.47380 -14.95365 -14.76737 -14.44583 -14.20077 -13.53991 -13.17571 -12.93321 -12.88327 -12.81444 -12.46440 -12.01771 -11.66586 -11.49201 -11.22037 -11.06767 -10.90847 -10.59267 -10.47279 -10.37141 -10.05640 -9.57715 -9.27523 -8.88877 -8.64130 -8.28807 -7.81029 -6.27491 -4.35907 1.19317 2.18515 2.57581 3.22121 3.29617 3.32618 3.56772 3.69736 4.12445 4.28612 4.68157 4.92634 5.01594 5.12985 5.42866 5.49373 5.60869 5.82285 5.90432 5.95460 6.00829 6.03224 6.22551 6.48756 6.60795 6.83685 6.91546 7.02183 7.28821 7.38414 7.52646 7.75641 8.02830 8.22213 8.64980 8.70565 9.33212 9.47162 10.80353 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.005198 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.382739 B = 5385.676227 C = 5809.563926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.030 3.970 3 O -0.204 6.204 4 C 0.163 3.837 5 N -0.455 5.455 6 C -0.061 4.061 7 C 0.599 3.401 8 O -0.549 6.549 9 N -0.591 5.591 10 C 0.106 3.894 11 C -0.121 4.121 12 C 0.248 3.752 13 O -0.586 6.586 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.102 3.898 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.253 0.747 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.385 0.615 32 H 0.271 0.729 33 H 0.066 0.934 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 15.238 -0.849 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.026 4.026 3 O -0.091 6.091 4 C -0.065 4.065 5 N -0.184 5.184 6 C -0.181 4.181 7 C 0.386 3.614 8 O -0.429 6.429 9 N -0.321 5.321 10 C -0.016 4.016 11 C -0.159 4.159 12 C 0.208 3.792 13 O -0.396 6.396 14 C -0.574 4.574 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.019 4.019 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.268 0.732 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.857 15.084 -0.856 15.133 hybrid contribution -0.865 -0.737 -0.380 1.198 sum -0.008 14.348 -1.236 14.401 Atomic orbital electron populations 1.20408 0.82645 1.03334 1.05673 1.23687 0.95147 0.83328 1.00409 1.84339 1.18625 1.36317 1.69783 1.28052 0.85200 0.91555 1.01742 1.70911 1.21945 1.09554 1.15987 1.21682 0.88502 0.95897 1.12040 1.16374 0.84957 0.81923 0.78192 1.90766 1.15939 1.83105 1.53043 1.48552 1.07145 1.07596 1.68854 1.22474 0.79260 0.98865 1.01023 1.22802 0.99776 0.93593 0.99705 1.19498 0.86854 0.90906 0.81989 1.86084 1.58466 1.64033 1.31001 1.21547 1.26901 1.00825 1.08149 0.91465 1.25084 0.94056 0.98812 0.95352 1.69582 1.28018 1.32337 1.23700 0.86385 0.77476 0.82136 0.80814 1.20360 1.20992 1.19703 1.23101 1.01457 0.75535 1.01848 0.90640 0.88322 0.88336 0.73178 0.89777 0.92009 0.90748 0.90569 0.76291 0.91919 0.91609 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 9.13 36.01 0.33 -0.40 16 2 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 3 O -0.20 -2.45 10.73 6.51 0.07 -2.38 16 4 C 0.16 1.76 13.19 51.96 0.69 2.45 16 5 N -0.45 -6.94 8.44 -11.48 -0.10 -7.04 16 6 C -0.06 -1.06 6.81 -83.02 -0.57 -1.63 16 7 C 0.60 12.65 7.85 -12.52 -0.10 12.55 16 8 O -0.55 -12.53 15.93 5.27 0.08 -12.44 16 9 N -0.59 -13.06 3.33 -171.77 -0.57 -13.63 16 10 C 0.11 2.11 6.13 -2.52 -0.02 2.09 16 11 C -0.12 -2.55 6.23 -24.58 -0.15 -2.70 16 12 C 0.25 6.18 0.86 -89.93 -0.08 6.11 16 13 O -0.59 -15.24 13.07 -35.23 -0.46 -15.70 16 14 C -0.54 -14.22 8.12 -34.44 -0.28 -14.50 16 15 H 0.07 1.75 7.76 -52.49 -0.41 1.34 16 16 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 17 N -0.90 -24.07 10.97 55.43 0.61 -23.47 16 18 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.10 2.54 5.54 -3.06 -0.02 2.52 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 25 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 26 H 0.25 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.08 1.52 6.15 -51.93 -0.32 1.20 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.39 10.25 6.98 45.56 0.32 10.57 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 33 H 0.07 1.77 8.07 -51.93 -0.42 1.35 16 34 H 0.07 1.80 7.82 -51.93 -0.41 1.39 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -31.11 291.66 -4.85 -35.97 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.31 Total: 10.35 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.55 Total: 8.39 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.06 Total: -44.13 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.31 Total: -30.52 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.11 -4.85 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326420362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.115 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds