Wall clock time and date at job start Mon Mar 30 2020 00:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34252 * 126.52462 * 2 1 4 4 C 1.34054 * 108.22471 * 179.97438 * 3 2 1 5 5 N 1.29936 * 109.24429 * 0.02562 * 4 3 2 6 6 C 1.36070 * 108.47282 * 0.02562 * 5 4 3 7 7 C 1.47422 * 126.44261 * 180.02562 * 6 5 4 8 8 O 1.21610 * 119.99870 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00406 * 359.96724 * 7 6 5 10 10 C 1.47428 * 125.64364 * 0.02878 * 9 7 6 11 11 C 1.54918 * 104.83032 * 204.08975 * 10 9 7 12 12 C 1.55157 * 101.58026 * 322.99027 * 11 10 9 13 13 O 1.42894 * 110.72161 * 277.13885 * 12 11 10 14 14 C 1.50699 * 110.71644 * 154.04201 * 12 11 10 15 15 H 1.07991 * 120.00239 * 359.97438 * 14 12 11 16 16 C 1.37882 * 119.99751 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99875 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00015 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46981 * 89.99936 * 18 16 14 20 20 H 1.48499 * 109.47158 * 210.00005 * 18 16 14 21 21 H 1.48502 * 109.47367 * 330.00298 * 18 16 14 22 22 C 1.47019 * 125.65340 * 179.71641 * 9 7 6 23 23 H 1.09003 * 109.46878 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47125 * 120.02271 * 1 2 3 25 25 H 1.08998 * 109.47145 * 240.02124 * 1 2 3 26 26 H 1.08001 * 125.37615 * 180.02562 * 4 3 2 27 27 H 1.09003 * 110.37083 * 322.92694 * 10 9 7 28 28 H 1.08997 * 110.36902 * 85.14556 * 10 9 7 29 29 H 1.08997 * 111.00447 * 81.06556 * 11 10 9 30 30 H 1.08999 * 110.99992 * 204.92136 * 11 10 9 31 31 H 0.96705 * 113.99998 * 179.97438 * 13 12 11 32 32 H 0.96998 * 119.99648 * 180.02562 * 17 16 14 33 33 H 1.08999 * 109.88364 * 298.40219 * 22 9 7 34 34 H 1.09002 * 109.87687 * 59.56287 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6579 0.0006 5 7 3.6002 -0.6413 0.0004 6 6 2.3169 -1.0936 -0.0009 7 6 1.8853 -2.5032 -0.0010 8 8 0.7002 -2.7762 -0.0018 9 7 2.8039 -3.4894 -0.0004 10 6 4.2662 -3.3014 0.0010 11 6 4.8344 -4.6066 -0.6101 12 6 3.8680 -5.6706 -0.0257 13 8 4.2655 -6.0433 1.2953 14 6 3.8020 -6.8803 -0.9219 15 1 4.3853 -6.9119 -1.8302 16 6 2.9960 -7.9464 -0.5827 17 7 2.2845 -7.9072 0.5227 18 14 2.9136 -9.4456 -1.6939 19 1 3.9546 -10.4226 -1.2850 20 1 1.5729 -10.0737 -1.5791 21 1 3.1479 -9.0325 -3.1009 22 6 2.5139 -4.9307 0.0054 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5142 -0.8898 25 1 -0.3633 -0.5135 0.8902 26 1 4.4489 1.2977 0.0011 27 1 4.5391 -2.4442 -0.6146 28 1 4.6305 -3.1675 1.0195 29 1 4.7794 -4.5847 -1.6985 30 1 5.8568 -4.7818 -0.2755 31 1 3.6934 -6.7062 1.7058 32 1 1.7178 -8.6574 0.7615 33 1 1.9656 -5.1948 0.9097 34 1 1.9290 -5.1946 -0.8757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326420362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:38 Heat of formation + Delta-G solvation = -81.024919 kcal Electronic energy + Delta-G solvation = -20549.708640 eV Core-core repulsion = 17255.543929 eV Total energy + Delta-G solvation = -3294.164711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.42646 -40.92773 -38.97563 -36.28737 -35.69520 -34.19234 -33.38566 -31.84339 -29.76247 -28.56397 -27.04490 -25.09215 -23.68950 -22.80035 -21.41416 -20.70600 -19.18320 -18.64535 -17.92752 -17.41988 -17.27624 -16.57715 -16.42283 -15.96149 -15.58871 -14.89668 -14.81443 -14.73132 -14.47868 -13.99763 -13.76160 -13.55047 -13.40219 -13.28256 -12.86655 -12.57636 -12.44440 -12.31751 -12.29013 -12.14188 -11.67015 -11.21443 -11.12947 -10.63887 -10.32735 -10.05434 -9.54658 -8.28448 -6.44921 0.04582 1.09691 1.41608 1.43118 1.53370 1.57764 2.02933 2.20650 2.37592 2.97440 3.09570 3.62196 3.68522 3.83111 4.09156 4.21185 4.24228 4.35547 4.44432 4.56678 4.63477 4.76257 4.87166 4.96602 5.08730 5.10530 5.16668 5.32164 5.35765 5.47094 5.72860 6.01631 6.43352 6.56430 6.64376 7.02903 7.27082 7.36534 8.78252 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.005198 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.382739 B = 5385.676227 C = 5809.563926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.048 3.952 3 O -0.194 6.194 4 C 0.198 3.802 5 N -0.493 5.493 6 C -0.102 4.102 7 C 0.592 3.408 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.115 4.115 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.558 4.558 15 H 0.068 0.932 16 C 0.025 3.975 17 N -0.918 5.918 18 Si 0.968 3.032 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.120 3.880 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.310 0.690 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.379 0.621 32 H 0.272 0.728 33 H 0.033 0.967 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 17.439 -1.606 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.009 4.009 3 O -0.081 6.081 4 C -0.030 4.030 5 N -0.222 5.222 6 C -0.219 4.219 7 C 0.382 3.618 8 O -0.460 6.460 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.152 4.152 12 C 0.194 3.806 13 O -0.400 6.400 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.175 4.175 17 N -0.558 5.558 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.003 4.003 23 H 0.131 0.869 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.325 0.675 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.935 17.299 -1.615 17.482 hybrid contribution -1.197 -1.288 -0.117 1.762 sum 0.738 16.011 -1.732 16.121 Atomic orbital electron populations 1.20505 0.81211 1.05548 1.04895 1.23962 0.96044 0.82964 0.97967 1.84408 1.19009 1.35140 1.69518 1.29309 0.85846 0.90746 0.97096 1.70784 1.21009 1.11847 1.18537 1.21166 0.90484 0.94171 1.16118 1.16980 0.84455 0.83488 0.76869 1.90725 1.17115 1.84088 1.54081 1.48607 1.08405 1.06499 1.69772 1.22453 0.77698 0.98868 1.01168 1.22804 0.99611 0.92782 1.00052 1.19711 0.87909 0.91592 0.81423 1.86072 1.58355 1.63817 1.31712 1.21843 1.27350 1.01838 1.08606 0.91346 1.25852 0.93600 1.01457 0.96603 1.69684 1.28258 1.33008 1.24866 0.85406 0.77430 0.78772 0.79150 1.19659 1.20902 1.19201 1.22622 1.00915 0.77967 0.98814 0.86907 0.88985 0.89127 0.67540 0.87434 0.92300 0.89974 0.89250 0.77065 0.91834 0.94828 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.13 71.24 0.65 -0.74 16 2 C 0.05 1.26 7.44 25.19 0.19 1.45 16 3 O -0.19 -3.89 10.73 0.39 0.00 -3.89 16 4 C 0.20 3.42 13.19 130.52 1.72 5.14 16 5 N -0.49 -13.81 8.44 -305.14 -2.58 -16.39 16 6 C -0.10 -3.42 6.81 40.41 0.28 -3.14 16 7 C 0.59 25.60 7.85 86.66 0.68 26.28 16 8 O -0.58 -27.46 15.93 -4.06 -0.06 -27.53 16 9 N -0.60 -27.27 3.33 -815.62 -2.71 -29.98 16 10 C 0.12 4.69 6.13 86.86 0.53 5.22 16 11 C -0.11 -4.80 6.23 31.99 0.20 -4.60 16 12 C 0.23 11.93 0.86 -10.35 -0.01 11.92 16 13 O -0.59 -31.51 13.07 -148.98 -1.95 -33.46 16 14 C -0.56 -30.09 8.12 25.60 0.21 -29.88 16 15 H 0.07 3.58 7.76 -2.92 -0.02 3.55 16 16 C 0.03 1.35 5.28 84.66 0.45 1.80 16 17 N -0.92 -50.71 10.97 21.45 0.24 -50.47 16 18 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.12 6.25 5.54 86.73 0.48 6.73 16 23 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 25 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 26 H 0.31 1.11 8.06 -2.91 -0.02 1.09 16 27 H 0.11 3.71 6.15 -2.39 -0.01 3.70 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 3.28 8.03 -2.39 -0.02 3.26 16 30 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.38 20.96 6.98 -74.05 -0.52 20.44 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.03 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.04 2.23 7.82 -2.39 -0.02 2.21 16 Total: -1.00 -70.07 291.66 0.96 -69.11 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.62 Total: 27.93 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 5.37 Total: 20.18 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -5.05 Total: -96.84 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -2.01 Total: -64.88 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.07 0.96 -69.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326420362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.911 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds