Wall clock time and date at job start Mon Mar 30 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47479 * 2 1 4 4 C 1.50704 * 109.47238 * 120.00081 * 2 1 3 5 5 H 1.08001 * 119.99979 * 119.99258 * 4 2 1 6 6 C 1.37882 * 119.99634 * 299.99713 * 4 2 1 7 7 N 1.31507 * 120.00105 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99474 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46724 * 90.00570 * 8 6 4 10 10 H 1.48500 * 109.46848 * 209.99956 * 8 6 4 11 11 H 1.48491 * 109.47420 * 330.00366 * 8 6 4 12 12 O 1.45201 * 109.46784 * 239.99643 * 2 1 3 13 13 C 1.34879 * 116.99897 * 90.00392 * 12 2 1 14 14 O 1.21609 * 119.99711 * 359.97438 * 13 12 2 15 15 C 1.46582 * 119.99861 * 179.97438 * 13 12 2 16 16 C 1.37033 * 126.94506 * 179.97438 * 15 13 12 17 17 N 1.33532 * 107.85337 * 179.97438 * 16 15 13 18 18 C 1.30272 * 109.66758 * 359.97438 * 17 16 15 19 19 N 1.35157 * 108.98994 * 0.03803 * 18 17 16 20 20 C 1.46506 * 123.70577 * 179.97438 * 19 18 17 21 21 C 1.53472 * 108.12655 * 343.75852 * 20 19 18 22 22 O 1.43041 * 109.59047 * 48.14855 * 21 20 19 23 23 C 1.43446 * 114.04432 * 289.99759 * 22 21 20 24 24 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47041 * 300.00073 * 1 2 3 26 26 H 1.08996 * 109.47664 * 60.00016 * 1 2 3 27 27 H 0.97002 * 119.99948 * 179.97438 * 7 6 4 28 28 H 1.08000 * 126.07812 * 0.02562 * 16 15 13 29 29 H 1.08998 * 109.72912 * 224.10186 * 20 19 18 30 30 H 1.09001 * 109.76631 * 103.43537 * 20 19 18 31 31 H 1.09002 * 109.44685 * 168.18093 * 21 20 19 32 32 H 1.08997 * 109.44772 * 288.12496 * 21 20 19 33 33 H 1.09001 * 109.83907 * 290.11578 * 23 22 21 34 34 H 1.08995 * 109.80550 * 169.28794 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7120 12 8 2.0139 -0.6846 -1.1855 13 6 2.2181 0.0675 -2.2864 14 8 1.9969 1.2629 -2.2557 15 6 2.7065 -0.5561 -3.5198 16 6 2.9612 0.0675 -4.7131 17 7 3.3900 -0.8577 -5.5752 18 6 3.4187 -2.0216 -4.9909 19 7 3.0017 -1.8825 -3.7128 20 6 2.9082 -2.9938 -2.7626 21 6 2.9529 -4.3062 -3.5569 22 8 4.0362 -4.2654 -4.4900 23 6 3.8376 -3.3502 -5.5766 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1609 3.4844 28 1 2.8379 1.1204 -4.9195 29 1 1.9699 -2.9288 -2.2117 30 1 3.7467 -2.9558 -2.0672 31 1 3.0960 -5.1410 -2.8707 32 1 2.0145 -4.4363 -4.0959 33 1 3.0561 -3.7249 -6.2377 34 1 4.7667 -3.2314 -6.1339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342630550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:41 Heat of formation + Delta-G solvation = -68.216298 kcal Electronic energy + Delta-G solvation = -20403.741605 eV Core-core repulsion = 17110.132318 eV Total energy + Delta-G solvation = -3293.609287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.49509 -39.34884 -38.44513 -35.81597 -34.28676 -33.31433 -30.86753 -30.13893 -29.49506 -26.43763 -25.42374 -24.10605 -23.42090 -21.08722 -20.27248 -19.40861 -17.92237 -17.11507 -16.72312 -16.31460 -15.89927 -15.51347 -15.30114 -15.05490 -14.56989 -14.50943 -14.04604 -13.39946 -13.09663 -12.86378 -12.38901 -12.09237 -12.00651 -11.51517 -11.33162 -11.16264 -10.96755 -10.57349 -10.47406 -10.38631 -10.23175 -9.91149 -9.71570 -9.68330 -9.03005 -8.60173 -8.48884 -6.27654 -4.35637 1.30261 2.41539 2.74650 3.17950 3.22734 3.25947 3.35883 3.46870 3.50577 3.89992 4.23757 4.28795 4.63696 4.81276 4.96837 5.05146 5.05774 5.26330 5.28936 5.43100 5.47779 5.78001 6.03432 6.40757 6.51406 6.59849 6.76765 6.79416 6.91299 7.00884 7.47064 7.60609 7.79371 7.83464 8.01483 8.46455 8.73938 9.30118 10.79741 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.005504 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.721181 B = 5085.609884 C = 5906.979174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.524 4.524 5 H 0.068 0.932 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.912 3.088 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.272 1.272 12 O -0.357 6.357 13 C 0.530 3.470 14 O -0.503 6.503 15 C -0.045 4.045 16 C 0.058 3.942 17 N -0.482 5.482 18 C 0.180 3.820 19 N -0.425 5.425 20 C 0.067 3.933 21 C 0.047 3.953 22 O -0.372 6.372 23 C 0.150 3.850 24 H 0.036 0.964 25 H 0.101 0.899 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.188 0.812 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -10.035 -12.178 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.274 6.274 13 C 0.373 3.627 14 O -0.391 6.391 15 C -0.160 4.160 16 C -0.096 4.096 17 N -0.202 5.202 18 C -0.082 4.082 19 N -0.108 5.108 20 C -0.054 4.054 21 C -0.030 4.030 22 O -0.289 6.289 23 C 0.072 3.928 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.205 0.795 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.053 -9.677 -12.561 16.148 hybrid contribution -0.314 -0.053 1.845 1.873 sum 2.739 -9.730 -10.716 14.731 Atomic orbital electron populations 1.22171 0.97382 1.00098 1.01612 1.20709 0.91451 0.94083 0.77253 0.93349 1.20963 1.32806 1.13606 0.88770 0.91404 1.24883 0.94820 0.95079 0.99076 1.69888 1.35711 1.22458 1.24347 0.86265 0.78636 0.79794 0.81387 1.20334 1.20861 1.19629 1.86563 1.76199 1.43353 1.21270 1.19475 0.75094 0.85074 0.83043 1.90854 1.48906 1.15219 1.84163 1.20417 1.14831 0.83808 0.96955 1.22731 1.00013 0.99650 0.87172 1.69829 1.20494 0.97878 1.32009 1.24124 1.03314 0.97928 0.82839 1.45260 1.46501 1.07524 1.11498 1.22937 1.06982 0.83612 0.91907 1.23102 0.90828 0.96730 0.92323 1.88162 1.42636 1.61021 1.37093 1.21291 1.03574 0.79793 0.88148 0.94493 0.88068 0.96405 0.92254 0.79475 0.86407 0.87786 0.85788 0.91459 0.89526 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.33 37.16 0.35 -3.47 16 2 C 0.22 5.66 2.57 -27.88 -0.07 5.59 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.14 8.90 -34.44 -0.31 -14.44 16 5 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.98 16 8 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 O -0.36 -8.19 8.22 -40.98 -0.34 -8.53 16 13 C 0.53 11.49 7.91 34.10 0.27 11.76 16 14 O -0.50 -12.07 16.17 -19.35 -0.31 -12.38 16 15 C -0.05 -0.82 6.95 -82.51 -0.57 -1.40 16 16 C 0.06 0.96 11.68 -17.25 -0.20 0.76 16 17 N -0.48 -7.57 11.19 -10.28 -0.11 -7.68 16 18 C 0.18 2.52 7.78 -155.30 -1.21 1.32 16 19 N -0.42 -6.55 3.16 -109.68 -0.35 -6.89 16 20 C 0.07 0.86 6.44 -3.79 -0.02 0.83 16 21 C 0.05 0.43 6.83 37.40 0.26 0.69 16 22 O -0.37 -3.87 10.79 -35.23 -0.38 -4.25 16 23 C 0.15 1.45 7.29 36.21 0.26 1.72 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.19 2.77 8.06 -52.49 -0.42 2.35 16 29 H 0.12 1.57 7.41 -51.93 -0.38 1.19 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -31.64 294.44 -6.79 -38.43 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.00 Total: 0.45 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.34 Total: 4.97 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.17 Total: -38.55 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.03 Total: -25.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.64 -6.79 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342630550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.789 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds