Wall clock time and date at job start Mon Mar 30 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1 14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1 15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47076 * 180.02562 * 16 15 14 18 18 C 1.38590 * 120.73895 * 269.72150 * 17 16 15 19 19 N 1.32304 * 119.17422 * 179.69799 * 18 17 16 20 20 C 1.32321 * 120.75971 * 0.60582 * 19 18 17 21 21 O 1.35451 * 119.19527 * 179.69137 * 20 19 18 22 22 N 1.32323 * 121.60603 * 359.66443 * 20 19 18 23 23 C 1.32299 * 120.76161 * 0.02562 * 22 20 19 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47195 * 300.00371 * 15 14 12 29 29 H 1.08991 * 109.46936 * 60.00159 * 15 14 12 30 30 H 1.09002 * 109.47315 * 300.00042 * 16 15 14 31 31 H 1.09004 * 109.47695 * 60.00078 * 16 15 14 32 32 H 1.07997 * 120.41374 * 359.97438 * 18 17 16 33 33 H 0.96705 * 113.99556 * 269.97604 * 21 20 19 34 34 H 1.08000 * 120.41269 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7549 -0.3199 4.8833 17 6 2.2937 -1.0819 6.0666 18 6 1.5721 -2.1244 6.6261 19 7 2.0773 -2.7763 7.6606 20 6 3.2508 -2.4352 8.1679 21 8 3.7352 -3.1202 9.2313 22 7 3.9629 -1.4416 7.6613 23 6 3.5195 -0.7520 6.6230 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.7092 1.1618 -3.4843 28 1 1.8627 -2.0133 3.5565 29 1 3.3163 -0.9861 3.5568 30 1 2.1187 0.7071 4.9167 31 1 0.6653 -0.3205 4.9160 32 1 0.6113 -2.4041 6.2199 33 1 3.4751 -2.7529 10.0873 34 1 4.1052 0.0582 6.2144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348255142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:02 Heat of formation + Delta-G solvation = -85.052206 kcal Electronic energy + Delta-G solvation = -19093.237102 eV Core-core repulsion = 15798.897755 eV Total energy + Delta-G solvation = -3294.339347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52468 -39.63077 -37.87936 -36.07818 -34.16213 -33.98531 -33.88235 -30.69069 -29.04471 -25.24415 -25.12567 -24.84518 -23.01340 -21.84228 -19.87240 -19.60222 -18.34588 -16.85958 -16.83192 -16.14655 -15.96566 -15.58596 -15.23564 -14.55183 -14.40529 -14.04323 -13.90549 -13.66079 -12.95291 -12.69216 -12.43668 -11.97879 -11.63817 -11.49983 -11.39106 -11.25259 -11.06304 -10.83709 -10.73402 -10.37979 -10.10275 -10.08778 -9.58899 -9.48450 -9.15950 -9.09278 -8.47684 -6.13731 -4.19412 0.37974 0.68386 2.73069 3.17648 3.24936 3.31064 3.33678 3.37371 3.49042 3.89379 4.22022 4.37331 4.45592 4.53384 4.78980 5.02368 5.04755 5.19739 5.37666 5.40799 5.68623 5.82047 5.89043 6.12805 6.41556 6.62182 6.81887 6.83769 7.08040 7.14423 7.39475 7.62405 7.70709 7.90907 8.10557 8.78934 8.89674 9.46449 10.93601 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047797 B = 0.003162 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.674712 B = 8852.143365 C = 9087.826782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.365 6.365 15 C 0.066 3.934 16 C -0.069 4.069 17 C -0.194 4.194 18 C 0.177 3.823 19 N -0.524 5.524 20 C 0.485 3.515 21 O -0.459 6.459 22 N -0.524 5.524 23 C 0.177 3.823 24 H 0.096 0.904 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.264 0.736 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.410 0.590 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -0.045 19.143 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.284 6.284 15 C -0.009 4.009 16 C -0.107 4.107 17 C -0.198 4.198 18 C 0.012 3.988 19 N -0.249 5.249 20 C 0.181 3.819 21 O -0.262 6.262 22 N -0.249 5.249 23 C 0.012 3.988 24 H 0.115 0.885 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.194 0.806 33 H 0.269 0.731 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.469 -1.184 19.483 19.524 hybrid contribution -0.021 0.040 -1.008 1.009 sum 0.448 -1.144 18.475 18.515 Atomic orbital electron populations 1.21737 0.95577 1.00058 1.01774 1.18760 0.94871 0.96966 0.85447 0.91767 1.21099 1.32059 1.13313 0.88822 0.90712 1.24929 0.94856 0.94999 0.99124 1.69863 1.36439 1.22749 1.24021 0.86433 0.79316 0.79688 0.81305 1.20070 1.21185 1.20068 1.25389 0.76552 0.83238 0.83817 1.90511 1.36322 1.26753 1.86713 1.86598 1.70551 1.55831 1.15404 1.22742 0.98934 0.95492 0.83706 1.20335 1.02466 0.99286 0.88649 1.21553 0.97857 1.00150 1.00284 1.23129 0.98930 0.88346 0.88442 1.67993 1.13210 1.30023 1.13647 1.20321 0.85101 0.86305 0.90134 1.84726 1.73813 1.52413 1.15285 1.67992 1.35932 1.07380 1.13572 1.23128 0.91827 0.95481 0.88413 0.88548 0.94993 0.95724 0.92596 0.91719 0.91707 0.88895 0.88885 0.80593 0.73063 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.90 37.16 0.33 -2.72 16 2 C 0.06 1.44 2.74 -92.92 -0.25 1.19 16 3 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.52 -14.25 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.16 6.76 -52.49 -0.35 1.80 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.47 10.53 7.25 36.01 0.26 10.79 16 13 O -0.52 -12.89 15.21 -18.75 -0.29 -13.18 16 14 O -0.37 -6.65 10.12 -39.24 -0.40 -7.05 16 15 C 0.07 0.92 5.45 37.16 0.20 1.12 16 16 C -0.07 -0.64 5.77 -27.89 -0.16 -0.80 16 17 C -0.19 -1.79 5.17 -104.36 -0.54 -2.33 16 18 C 0.18 1.70 11.00 -17.22 -0.19 1.51 16 19 N -0.52 -6.06 10.46 -14.73 -0.15 -6.22 16 20 C 0.49 5.64 8.72 -91.25 -0.80 4.84 16 21 O -0.46 -4.51 13.64 -18.04 -0.25 -4.76 16 22 N -0.52 -6.06 10.46 -14.73 -0.15 -6.21 16 23 C 0.18 1.69 11.00 -17.22 -0.19 1.50 16 24 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.09 0.76 8.10 -51.93 -0.42 0.33 16 31 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.41 1.69 9.06 45.56 0.41 2.10 16 34 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -33.19 304.93 -5.94 -39.13 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.19 Total: -0.92 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.72 Total: 2.17 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.32 Total: -36.23 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.93 Total: -24.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.19 -5.94 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348255142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.920 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds