Wall clock time and date at job start Mon Mar 30 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.20828 * 119.99823 * 119.99631 * 12 2 1 14 14 O 1.34224 * 120.00059 * 299.99952 * 12 2 1 15 15 C 1.45206 * 116.99841 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46850 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47076 * 180.02562 * 16 15 14 18 18 C 1.38590 * 120.73895 * 269.72150 * 17 16 15 19 19 N 1.32304 * 119.17422 * 179.69799 * 18 17 16 20 20 C 1.32321 * 120.75971 * 0.60582 * 19 18 17 21 21 O 1.35451 * 119.19527 * 179.69137 * 20 19 18 22 22 N 1.32323 * 121.60603 * 359.66443 * 20 19 18 23 23 C 1.32299 * 120.76161 * 0.02562 * 22 20 19 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47195 * 300.00371 * 15 14 12 29 29 H 1.08991 * 109.46936 * 60.00159 * 15 14 12 30 30 H 1.09002 * 109.47315 * 300.00042 * 16 15 14 31 31 H 1.09004 * 109.47695 * 60.00078 * 16 15 14 32 32 H 1.07997 * 120.41374 * 359.97438 * 18 17 16 33 33 H 0.96705 * 113.99556 * 269.97604 * 21 20 19 34 34 H 1.08000 * 120.41269 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7549 -0.3199 4.8833 17 6 2.2937 -1.0819 6.0666 18 6 1.5721 -2.1244 6.6261 19 7 2.0773 -2.7763 7.6606 20 6 3.2508 -2.4352 8.1679 21 8 3.7352 -3.1202 9.2313 22 7 3.9629 -1.4416 7.6613 23 6 3.5195 -0.7520 6.6230 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.7092 1.1618 -3.4843 28 1 1.8627 -2.0133 3.5565 29 1 3.3163 -0.9861 3.5568 30 1 2.1187 0.7071 4.9167 31 1 0.6653 -0.3205 4.9160 32 1 0.6113 -2.4041 6.2199 33 1 3.4751 -2.7529 10.0873 34 1 4.1052 0.0582 6.2144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348255142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:02 Heat of formation + Delta-G solvation = -110.699094 kcal Electronic energy + Delta-G solvation = -19094.349235 eV Core-core repulsion = 15798.897755 eV Total energy + Delta-G solvation = -3295.451480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29007 -41.28827 -38.64382 -37.60172 -35.90298 -34.93532 -34.90509 -32.63258 -30.01879 -27.25864 -25.96730 -25.86418 -24.54945 -22.80753 -21.60174 -20.32695 -19.12922 -18.61231 -18.04205 -17.63145 -17.47350 -17.20032 -16.20279 -15.99908 -15.39039 -15.16977 -14.86439 -14.66078 -14.55283 -14.24130 -13.60177 -13.20383 -13.00375 -12.88212 -12.77773 -12.68343 -12.56590 -12.28164 -12.23052 -12.06143 -12.03641 -11.46977 -11.09858 -11.02506 -10.52043 -10.31178 -10.25624 -8.19168 -6.32066 -0.38219 -0.04570 1.43364 1.44044 1.47474 1.52583 1.88732 2.04898 2.43871 2.56351 3.11138 3.18986 3.53327 3.71341 3.72894 3.99751 4.11429 4.11768 4.27969 4.49165 4.67232 4.73296 4.93617 4.95117 5.01515 5.07116 5.20379 5.42617 5.52272 5.70598 5.71358 5.92202 6.13739 6.51062 6.74158 6.85641 7.07606 7.36867 8.86814 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047797 B = 0.003162 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.674712 B = 8852.143365 C = 9087.826782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.474 3.526 13 O -0.546 6.546 14 O -0.356 6.356 15 C 0.059 3.941 16 C -0.053 4.053 17 C -0.191 4.191 18 C 0.175 3.825 19 N -0.546 5.546 20 C 0.477 3.523 21 O -0.471 6.471 22 N -0.546 5.546 23 C 0.175 3.825 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.268 0.732 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.201 0.799 33 H 0.431 0.569 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 0.364 19.707 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 H 0.071 0.929 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.436 6.436 14 O -0.273 6.273 15 C -0.015 4.015 16 C -0.091 4.091 17 C -0.196 4.196 18 C 0.010 3.990 19 N -0.271 5.271 20 C 0.173 3.827 21 O -0.278 6.278 22 N -0.271 5.271 23 C 0.010 3.990 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.218 0.782 33 H 0.294 0.706 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.034 -0.747 20.088 20.101 hybrid contribution 0.140 -0.076 -1.069 1.081 sum 0.105 -0.822 19.019 19.037 Atomic orbital electron populations 1.21568 0.94187 0.99915 1.02242 1.18673 0.96030 0.96190 0.86026 0.92856 1.21252 1.32680 1.13316 0.90719 0.92759 1.25588 0.94899 0.95637 1.01430 1.69940 1.36572 1.23280 1.24796 0.85583 0.78704 0.78707 0.78501 1.19998 1.19871 1.20042 1.24816 0.75909 0.82436 0.84888 1.90495 1.37650 1.28003 1.87473 1.86525 1.70022 1.55754 1.14986 1.23133 0.98917 0.95674 0.83766 1.20248 1.03572 0.99567 0.85711 1.21481 0.97773 1.00135 1.00171 1.23611 0.99749 0.87894 0.87754 1.68049 1.13531 1.30861 1.14684 1.20537 0.85259 0.86389 0.90561 1.84668 1.74005 1.52812 1.16270 1.68048 1.36457 1.08019 1.14607 1.23609 0.92110 0.95578 0.87736 0.90557 0.95333 0.92656 0.92239 0.92072 0.92076 0.87091 0.87048 0.78204 0.70634 0.78227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.90 71.98 0.64 -4.80 16 2 C 0.05 2.46 2.74 -12.29 -0.03 2.43 16 3 H 0.05 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.54 -30.30 8.37 25.60 0.21 -30.08 16 5 H 0.05 3.20 6.76 -2.91 -0.02 3.18 16 6 C 0.02 1.33 5.30 84.65 0.45 1.78 16 7 N -0.91 -49.42 11.32 21.45 0.24 -49.18 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.47 21.24 7.25 71.24 0.52 21.76 16 13 O -0.55 -27.42 15.21 21.96 0.33 -27.09 16 14 O -0.36 -12.31 10.12 -51.36 -0.52 -12.83 16 15 C 0.06 1.53 5.45 71.98 0.39 1.92 16 16 C -0.05 -0.81 5.77 29.85 0.17 -0.64 16 17 C -0.19 -3.06 5.17 -19.69 -0.10 -3.16 16 18 C 0.17 2.99 11.00 84.71 0.93 3.92 16 19 N -0.55 -11.97 10.46 -313.48 -3.28 -15.25 16 20 C 0.48 10.64 8.72 180.57 1.57 12.22 16 21 O -0.47 -8.94 13.64 -87.48 -1.19 -10.13 16 22 N -0.55 -11.97 10.46 -313.48 -3.28 -15.25 16 23 C 0.17 2.99 11.00 84.71 0.93 3.92 16 24 H 0.08 3.75 6.07 -2.39 -0.01 3.73 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 27 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.43 3.24 9.06 -74.05 -0.67 2.57 16 34 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.94 304.93 0.48 -70.46 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.46 Total: 4.66 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.69 Total: 9.25 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -6.32 Total: -79.68 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.38 Total: -50.05 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.94 0.48 -70.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348255142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.242 kcal (2) G-P(sol) polarization free energy of solvation -70.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds