Wall clock time and date at job start Mon Mar 30 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33865 * 125.72252 * 2 1 4 4 C 1.34909 * 109.71586 * 180.27085 * 3 2 1 5 5 C 1.46535 * 125.79216 * 179.70863 * 4 3 2 6 6 O 1.21617 * 119.99823 * 180.02562 * 5 4 3 7 7 O 1.34894 * 119.99923 * 0.02562 * 5 4 3 8 8 C 1.36358 * 108.41159 * 359.72632 * 4 3 2 9 9 C 1.36616 * 125.72997 * 179.79729 * 2 1 3 10 10 C 1.47673 * 126.64853 * 0.02562 * 9 2 1 11 11 N 1.29660 * 119.99720 * 359.70647 * 10 9 2 12 12 N 1.40109 * 119.99664 * 180.02562 * 11 10 9 13 13 C 1.46498 * 119.99760 * 180.27747 * 12 11 10 14 14 H 1.08998 * 109.47386 * 329.72195 * 13 12 11 15 15 C 1.52999 * 109.47214 * 89.72111 * 13 12 11 16 16 C 1.50697 * 109.46790 * 209.72098 * 13 12 11 17 17 H 1.08003 * 120.00582 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99874 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00084 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99742 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47631 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46671 * 120.00694 * 20 18 16 23 23 H 1.48502 * 109.47334 * 240.00076 * 20 18 16 24 24 H 1.09000 * 109.47191 * 270.19685 * 1 2 3 25 25 H 1.08998 * 109.47322 * 30.20042 * 1 2 3 26 26 H 1.09000 * 109.46696 * 150.19372 * 1 2 3 27 27 H 0.96707 * 117.00093 * 180.02562 * 7 5 4 28 28 H 1.08002 * 126.69359 * 180.02562 * 8 4 3 29 29 H 1.08001 * 120.00259 * 179.71117 * 10 9 2 30 30 H 0.97001 * 119.99794 * 359.97438 * 12 11 10 31 31 H 1.09003 * 109.47035 * 179.97438 * 15 13 12 32 32 H 1.09000 * 109.47195 * 299.99379 * 15 13 12 33 33 H 1.08999 * 109.47020 * 60.00304 * 15 13 12 34 34 H 0.96999 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2886 1.0868 0.0000 4 6 3.5853 0.7148 -0.0060 5 6 4.7368 1.6210 -0.0140 6 8 5.8660 1.1694 -0.0194 7 8 4.5444 2.9561 -0.0153 8 6 3.6426 -0.6476 -0.0038 9 6 2.3048 -1.1090 0.0039 10 6 1.8577 -2.5164 0.0084 11 7 0.5913 -2.7943 0.0146 12 7 0.1671 -4.1297 0.0193 13 6 -1.2638 -4.4437 0.0202 14 1 -1.8091 -3.6529 0.5354 15 6 -1.7632 -4.5514 -1.4220 16 6 -1.4900 -5.7540 0.7293 17 1 -0.6519 -6.2983 1.1388 18 6 -2.7673 -6.2576 0.8563 19 7 -3.7881 -5.5947 0.3582 20 14 -3.0476 -7.8822 1.7347 21 1 -1.7458 -8.4249 2.1992 22 1 -3.9385 -7.6658 2.9030 23 1 -3.6817 -8.8470 0.8007 24 1 -0.3633 0.0035 1.0276 25 1 -0.3634 0.8882 -0.5169 26 1 -0.3633 -0.8917 -0.5108 27 1 5.3346 3.5136 -0.0210 28 1 4.5349 -1.2560 -0.0069 29 1 2.5856 -3.3143 0.0065 30 1 0.8210 -4.8462 0.0176 31 1 -2.8278 -4.7854 -1.4213 32 1 -1.5996 -3.6036 -1.9349 33 1 -1.2180 -5.3422 -1.9371 34 1 -4.6866 -5.9492 0.4472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600828612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:26 Heat of formation + Delta-G solvation = -57.414023 kcal Electronic energy + Delta-G solvation = -19059.428280 eV Core-core repulsion = 15766.287415 eV Total energy + Delta-G solvation = -3293.140866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.78877 -40.98247 -38.17763 -37.24525 -36.19645 -34.46218 -33.19552 -32.52680 -29.39365 -28.48947 -27.26405 -24.76432 -23.82175 -22.31476 -22.15710 -20.78755 -19.30948 -18.69660 -18.24546 -17.73715 -17.44768 -16.89030 -16.33040 -16.15605 -15.61199 -14.75775 -14.56872 -14.39722 -14.22112 -14.09717 -13.85479 -13.77192 -13.36781 -12.96472 -12.90494 -12.73815 -12.71389 -12.54302 -12.22639 -12.13157 -12.07348 -11.17205 -11.01522 -10.80812 -10.54917 -9.79643 -8.41349 -8.15611 -6.31989 -0.25941 0.56398 1.33451 1.43107 1.45144 1.55897 1.67368 2.02256 2.21401 2.31845 2.51268 3.13385 3.59593 3.68430 4.06817 4.25824 4.33105 4.64807 4.67983 4.70968 4.75456 4.87545 5.03913 5.14281 5.15419 5.18711 5.36731 5.43551 5.57579 5.79199 5.85564 5.93279 6.20776 6.44338 6.85557 6.88076 7.39563 7.78363 8.88757 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046977 B = 0.003236 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.888389 B = 8651.113300 C = 8943.103524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.067 3.933 3 O -0.155 6.155 4 C -0.096 4.096 5 C 0.585 3.415 6 O -0.520 6.520 7 O -0.500 6.500 8 C -0.071 4.071 9 C -0.148 4.148 10 C 0.053 3.947 11 N -0.233 5.233 12 N -0.640 5.640 13 C 0.309 3.691 14 H 0.008 0.992 15 C -0.138 4.138 16 C -0.547 4.547 17 H 0.060 0.940 18 C 0.021 3.979 19 N -0.912 5.912 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.278 1.278 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.440 0.560 28 H 0.186 0.814 29 H 0.127 0.873 30 H 0.374 0.626 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.027 0.973 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.961 13.131 -1.199 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 O -0.051 6.051 4 C -0.145 4.145 5 C 0.430 3.570 6 O -0.412 6.412 7 O -0.315 6.315 8 C -0.092 4.092 9 C -0.151 4.151 10 C -0.157 4.157 11 N -0.043 5.043 12 N -0.377 5.377 13 C 0.205 3.795 14 H 0.026 0.974 15 C -0.197 4.197 16 C -0.586 4.586 17 H 0.078 0.922 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.791 3.209 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.204 1.204 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.304 0.696 28 H 0.203 0.797 29 H 0.144 0.856 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.511 13.415 -1.209 17.718 hybrid contribution 1.179 -1.402 0.358 1.866 sum 12.690 12.013 -0.851 17.495 Atomic orbital electron populations 1.20680 0.82609 1.05454 1.04911 1.23591 0.94970 0.82928 0.97460 1.84042 1.15629 1.34487 1.70892 1.20535 0.81648 0.92813 1.19527 1.18618 0.85240 0.81273 0.71845 1.90994 1.23432 1.78317 1.48487 1.84635 1.45070 1.16921 1.84844 1.22088 0.98044 0.92170 0.96862 1.18556 0.92474 0.91787 1.12286 1.22999 0.92005 0.93759 1.06907 1.73830 1.18095 1.04597 1.07827 1.48557 1.07449 0.98451 1.83267 1.18104 0.75006 0.93943 0.92431 0.97422 1.22039 1.02571 0.97345 0.97778 1.21570 0.93519 1.06439 1.37053 0.92215 1.25640 0.95488 1.00799 0.96034 1.70004 0.99515 1.39938 1.45635 0.85391 0.78192 0.79158 0.78143 1.19252 1.20645 1.20356 0.88766 0.88377 0.88438 0.69634 0.79716 0.85556 0.78930 0.91356 0.95935 0.95354 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.01 9.81 71.24 0.70 -1.31 16 2 C 0.07 1.81 7.37 25.31 0.19 2.00 16 3 O -0.15 -4.02 10.64 -4.04 -0.04 -4.06 16 4 C -0.10 -2.34 7.16 24.00 0.17 -2.17 16 5 C 0.58 12.49 8.31 69.98 0.58 13.07 16 6 O -0.52 -12.97 17.64 19.45 0.34 -12.63 16 7 O -0.50 -7.56 13.44 -56.60 -0.76 -8.32 16 8 C -0.07 -1.68 10.59 22.64 0.24 -1.44 16 9 C -0.15 -4.07 6.12 -20.36 -0.12 -4.20 16 10 C 0.05 1.64 11.03 87.51 0.96 2.60 16 11 N -0.23 -8.71 8.89 -52.07 -0.46 -9.17 16 12 N -0.64 -26.97 6.10 -172.53 -1.05 -28.02 16 13 C 0.31 15.34 3.23 44.24 0.14 15.48 16 14 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 15 C -0.14 -6.62 9.29 71.98 0.67 -5.95 16 16 C -0.55 -28.80 8.74 25.60 0.22 -28.58 16 17 H 0.06 3.08 7.79 -2.91 -0.02 3.05 16 18 C 0.02 1.10 5.30 84.66 0.45 1.55 16 19 N -0.91 -50.19 11.32 21.45 0.24 -49.95 16 20 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.10 2.92 6.23 -2.39 -0.01 2.91 16 27 H 0.44 1.74 9.11 -74.05 -0.67 1.06 16 28 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.13 3.37 8.02 -2.91 -0.02 3.34 16 30 H 0.37 14.60 8.58 -213.31 -1.83 12.77 16 31 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -63.25 308.73 3.15 -60.10 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -1.35 Total: 17.27 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 4.20 Total: -8.95 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.27 Total: -87.14 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.46 Total: -25.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.25 3.15 -60.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600828612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.686 kcal (2) G-P(sol) polarization free energy of solvation -63.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds