Wall clock time and date at job start Mon Mar 30 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47065 * 2 1 4 4 C 1.35590 * 125.67494 * 256.66079 * 3 2 1 5 5 C 1.35491 * 108.87864 * 180.02562 * 4 3 2 6 6 C 1.39803 * 107.87973 * 359.97438 * 5 4 3 7 7 C 1.37670 * 125.68830 * 76.66398 * 3 2 1 8 8 C 1.46544 * 126.23748 * 359.73250 * 7 3 2 9 9 O 1.21736 * 120.00284 * 11.66652 * 8 7 3 10 10 N 1.34777 * 120.00021 * 191.65991 * 8 7 3 11 11 C 1.36870 * 120.00143 * 181.53239 * 10 8 7 12 12 H 1.08006 * 120.00332 * 20.30628 * 11 10 8 13 13 C 1.39015 * 120.00258 * 200.30048 * 11 10 8 14 14 N 1.31390 * 120.00446 * 218.09023 * 13 11 10 15 15 Si 1.86796 * 119.99603 * 38.09404 * 13 11 10 16 16 H 1.48497 * 109.47514 * 89.59861 * 15 13 11 17 17 H 1.48498 * 109.47017 * 209.59952 * 15 13 11 18 18 H 1.48501 * 109.47254 * 329.59742 * 15 13 11 19 19 C 1.46504 * 120.00045 * 1.53945 * 10 8 7 20 20 C 1.50700 * 109.46915 * 276.18859 * 19 10 8 21 21 O 1.20823 * 119.99892 * 353.49840 * 20 19 10 22 22 O 1.34229 * 120.00113 * 173.49219 * 20 19 10 23 23 H 1.09004 * 109.47498 * 185.03242 * 1 2 3 24 24 H 1.09004 * 109.46915 * 305.03338 * 1 2 3 25 25 H 1.09004 * 109.47176 * 65.03062 * 1 2 3 26 26 H 1.08992 * 109.47167 * 239.99505 * 2 1 3 27 27 H 1.09000 * 109.46604 * 119.99475 * 2 1 3 28 28 H 1.07996 * 125.56512 * 359.97438 * 4 3 2 29 29 H 1.08002 * 126.06074 * 180.02562 * 5 4 3 30 30 H 1.08001 * 126.45968 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00724 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46720 * 36.18427 * 19 10 8 33 33 H 1.08997 * 109.47487 * 156.19071 * 19 10 8 34 34 H 0.96694 * 117.00350 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5215 2.0420 -1.0717 5 6 2.8692 3.2949 -0.6906 6 6 2.5738 3.4274 0.6694 7 6 2.0428 2.2244 1.0880 8 6 1.5833 1.9046 2.4423 9 8 1.3274 0.7529 2.7422 10 7 1.4440 2.8857 3.3558 11 6 1.0449 2.5831 4.6296 12 1 1.1546 1.5764 5.0051 13 6 0.4985 3.5715 5.4402 14 7 0.7829 3.6011 6.7226 15 14 -0.6400 4.8577 4.7061 16 1 -2.0414 4.3702 4.7658 17 1 -0.5221 6.1211 5.4773 18 1 -0.2615 5.1042 3.2914 19 6 1.7195 4.2761 2.9854 20 6 3.1984 4.5427 3.0995 21 8 3.9298 3.7010 3.5647 22 8 3.7031 5.7151 2.6842 23 1 -0.3634 -1.0237 0.0901 24 1 -0.3633 0.5900 0.8415 25 1 -0.3634 0.4338 -0.9316 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.6285 1.6358 -2.0666 29 1 3.2978 4.0565 -1.3252 30 1 2.7312 4.3057 1.2778 31 1 0.4020 4.2910 7.2881 32 1 1.3973 4.4492 1.9586 33 1 1.1773 4.9446 3.6541 34 1 4.6573 5.8402 2.7779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605927081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:57 Heat of formation + Delta-G solvation = -19.222190 kcal Electronic energy + Delta-G solvation = -21282.914010 eV Core-core repulsion = 17991.429266 eV Total energy + Delta-G solvation = -3291.484743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17261 -39.77735 -38.03972 -35.66134 -35.00240 -33.69648 -32.31759 -29.43638 -28.87655 -27.99483 -25.16454 -23.25468 -21.82967 -21.30438 -20.34145 -18.54854 -17.70722 -17.35204 -16.76914 -16.41107 -15.72462 -15.12160 -14.98291 -14.59571 -14.16533 -13.78997 -13.44849 -13.21151 -12.84079 -12.72624 -12.39550 -12.25810 -11.98846 -11.91900 -11.63117 -11.26862 -11.03363 -10.99915 -10.89639 -10.49952 -10.16652 -9.61317 -9.21636 -8.68434 -8.37720 -8.10135 -7.76314 -6.66918 -3.90165 2.07007 2.74823 2.90967 3.08214 3.11661 3.12820 3.23028 3.41977 3.96239 4.08495 4.41957 4.94050 4.95796 5.19530 5.31139 5.36854 5.50506 5.52058 5.66592 5.73986 5.78923 5.90141 5.92595 6.08768 6.38740 6.40331 6.55269 6.95915 7.09524 7.33484 7.42259 7.65773 8.07150 8.29401 8.44365 8.81354 9.15648 9.61875 10.43617 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.009133 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.252464 B = 3065.215885 C = 3796.236872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.411 5.411 4 C -0.011 4.011 5 C -0.203 4.203 6 C -0.203 4.203 7 C -0.004 4.004 8 C 0.520 3.480 9 O -0.568 6.568 10 N -0.416 5.416 11 C -0.324 4.324 12 H 0.119 0.881 13 C 0.064 3.936 14 N -0.818 5.818 15 Si 0.834 3.166 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.245 1.245 19 C 0.083 3.917 20 C 0.455 3.545 21 O -0.486 6.486 22 O -0.527 6.527 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.278 0.722 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 2.747 -13.612 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.085 5.085 4 C -0.144 4.144 5 C -0.228 4.228 6 C -0.228 4.228 7 C -0.119 4.119 8 C 0.311 3.689 9 O -0.453 6.453 10 N -0.134 5.134 11 C -0.449 4.449 12 H 0.136 0.864 13 C -0.145 4.145 14 N -0.451 5.451 15 Si 0.658 3.342 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.171 1.171 19 C -0.043 4.043 20 C 0.295 3.705 21 O -0.370 6.370 22 O -0.340 6.340 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.178 0.822 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.932 1.539 -13.087 13.210 hybrid contribution 0.119 0.953 -0.133 0.969 sum 1.051 2.492 -13.220 13.493 Atomic orbital electron populations 1.22059 0.94244 1.03001 1.02631 1.21918 0.95962 0.79891 1.04173 1.44017 1.45746 1.11259 1.07444 1.21822 1.06325 0.94059 0.92231 1.20707 1.09382 0.96826 0.95845 1.22090 1.06828 0.97504 0.96398 1.20542 1.10089 0.91339 0.89940 1.16576 0.84099 0.85788 0.82411 1.90646 1.55549 1.18977 1.80117 1.42978 1.56877 1.02761 1.10819 1.19034 1.41198 0.99846 0.84857 0.86385 1.25191 0.97461 0.96926 0.94961 1.70035 1.35881 1.32917 1.06265 0.87935 0.84009 0.81357 0.80889 1.19570 1.19979 1.17073 1.22601 0.88126 0.88508 1.05100 1.24376 0.93088 0.78942 0.74135 1.90734 1.60497 1.45803 1.39991 1.84573 1.31003 1.39629 1.78789 0.91066 0.90848 0.92914 0.89975 0.87876 0.82219 0.84676 0.83286 0.91168 0.85886 0.86523 0.74031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.06 37.16 0.37 -1.95 16 2 C 0.10 1.53 6.10 -4.04 -0.02 1.51 16 3 N -0.41 -7.19 2.78 -112.86 -0.31 -7.51 16 4 C -0.01 -0.16 11.35 -16.87 -0.19 -0.35 16 5 C -0.20 -3.15 10.81 -39.98 -0.43 -3.58 16 6 C -0.20 -3.78 8.11 -39.09 -0.32 -4.10 16 7 C 0.00 -0.08 6.65 -81.99 -0.55 -0.63 16 8 C 0.52 12.94 7.28 -12.91 -0.09 12.84 16 9 O -0.57 -15.31 13.94 5.16 0.07 -15.24 16 10 N -0.42 -10.51 1.95 -117.63 -0.23 -10.74 16 11 C -0.32 -9.15 9.53 -15.01 -0.14 -9.29 16 12 H 0.12 3.74 7.58 -52.48 -0.40 3.35 16 13 C 0.06 1.71 5.10 -17.45 -0.09 1.62 16 14 N -0.82 -22.77 13.96 55.50 0.77 -21.99 16 15 Si 0.83 18.41 26.27 -169.99 -4.47 13.94 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.25 -4.88 5.15 56.52 0.29 -4.59 16 19 C 0.08 1.77 3.72 -5.19 -0.02 1.75 16 20 C 0.46 9.33 5.71 36.01 0.21 9.53 16 21 O -0.49 -11.85 17.15 -18.75 -0.32 -12.17 16 22 O -0.53 -8.08 12.93 -39.26 -0.51 -8.59 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 27 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 28 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.15 2.70 2.74 -52.49 -0.14 2.56 16 31 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.12 2.33 5.13 -51.93 -0.27 2.06 16 33 H 0.12 2.49 2.82 -51.93 -0.15 2.34 16 34 H 0.40 4.30 9.10 45.56 0.41 4.72 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -33.91 283.16 -4.64 -38.54 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -2.63 Total: 12.13 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.28 Total: 7.36 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.23 Total: -40.24 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.76 Total: -36.00 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.47 Total: 13.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.91 -4.64 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605927081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.321 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds