Wall clock time and date at job start Mon Mar 30 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47065 * 2 1 4 4 C 1.35590 * 125.67494 * 256.66079 * 3 2 1 5 5 C 1.35491 * 108.87864 * 180.02562 * 4 3 2 6 6 C 1.39803 * 107.87973 * 359.97438 * 5 4 3 7 7 C 1.37670 * 125.68830 * 76.66398 * 3 2 1 8 8 C 1.46544 * 126.23748 * 359.73250 * 7 3 2 9 9 O 1.21736 * 120.00284 * 11.66652 * 8 7 3 10 10 N 1.34777 * 120.00021 * 191.65991 * 8 7 3 11 11 C 1.36870 * 120.00143 * 181.53239 * 10 8 7 12 12 H 1.08006 * 120.00332 * 20.30628 * 11 10 8 13 13 C 1.39015 * 120.00258 * 200.30048 * 11 10 8 14 14 N 1.31390 * 120.00446 * 218.09023 * 13 11 10 15 15 Si 1.86796 * 119.99603 * 38.09404 * 13 11 10 16 16 H 1.48497 * 109.47514 * 89.59861 * 15 13 11 17 17 H 1.48498 * 109.47017 * 209.59952 * 15 13 11 18 18 H 1.48501 * 109.47254 * 329.59742 * 15 13 11 19 19 C 1.46504 * 120.00045 * 1.53945 * 10 8 7 20 20 C 1.50700 * 109.46915 * 276.18859 * 19 10 8 21 21 O 1.20823 * 119.99892 * 353.49840 * 20 19 10 22 22 O 1.34229 * 120.00113 * 173.49219 * 20 19 10 23 23 H 1.09004 * 109.47498 * 185.03242 * 1 2 3 24 24 H 1.09004 * 109.46915 * 305.03338 * 1 2 3 25 25 H 1.09004 * 109.47176 * 65.03062 * 1 2 3 26 26 H 1.08992 * 109.47167 * 239.99505 * 2 1 3 27 27 H 1.09000 * 109.46604 * 119.99475 * 2 1 3 28 28 H 1.07996 * 125.56512 * 359.97438 * 4 3 2 29 29 H 1.08002 * 126.06074 * 180.02562 * 5 4 3 30 30 H 1.08001 * 126.45968 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00724 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.46720 * 36.18427 * 19 10 8 33 33 H 1.08997 * 109.47487 * 156.19071 * 19 10 8 34 34 H 0.96694 * 117.00350 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5215 2.0420 -1.0717 5 6 2.8692 3.2949 -0.6906 6 6 2.5738 3.4274 0.6694 7 6 2.0428 2.2244 1.0880 8 6 1.5833 1.9046 2.4423 9 8 1.3274 0.7529 2.7422 10 7 1.4440 2.8857 3.3558 11 6 1.0449 2.5831 4.6296 12 1 1.1546 1.5764 5.0051 13 6 0.4985 3.5715 5.4402 14 7 0.7829 3.6011 6.7226 15 14 -0.6400 4.8577 4.7061 16 1 -2.0414 4.3702 4.7658 17 1 -0.5221 6.1211 5.4773 18 1 -0.2615 5.1042 3.2914 19 6 1.7195 4.2761 2.9854 20 6 3.1984 4.5427 3.0995 21 8 3.9298 3.7010 3.5647 22 8 3.7031 5.7151 2.6842 23 1 -0.3634 -1.0237 0.0901 24 1 -0.3633 0.5900 0.8415 25 1 -0.3634 0.4338 -0.9316 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.6285 1.6358 -2.0666 29 1 3.2978 4.0565 -1.3252 30 1 2.7312 4.3057 1.2778 31 1 0.4020 4.2910 7.2881 32 1 1.3973 4.4492 1.9586 33 1 1.1773 4.9446 3.6541 34 1 4.6573 5.8402 2.7779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605927081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:57 Heat of formation + Delta-G solvation = -44.677918 kcal Electronic energy + Delta-G solvation = -21284.017853 eV Core-core repulsion = 17991.429266 eV Total energy + Delta-G solvation = -3292.588587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61624 -41.31176 -39.80512 -37.27167 -36.76638 -35.07474 -34.23925 -30.97545 -30.18846 -29.62099 -27.04598 -24.47895 -23.45902 -22.91644 -21.67590 -20.02467 -19.31056 -19.24010 -18.29052 -18.09203 -17.35092 -16.77237 -16.59084 -16.04636 -15.69434 -15.43263 -14.85137 -14.63670 -14.56114 -14.42430 -14.08937 -13.75089 -13.40610 -13.09620 -12.96113 -12.80494 -12.77763 -12.59196 -12.24228 -12.10350 -11.94001 -11.41138 -11.04143 -10.54544 -10.13946 -9.64524 -9.11742 -8.70195 -6.02233 0.57453 1.12589 1.15386 1.37039 1.40414 1.72209 1.86902 2.02143 2.08462 2.32886 2.70111 3.04053 3.67038 3.84417 3.87537 4.10780 4.13785 4.23975 4.33149 4.40882 4.47308 4.51724 4.76299 4.90273 5.14312 5.19764 5.26426 5.37462 5.59474 5.85768 5.96181 6.04125 6.33915 6.49058 6.79988 6.97659 7.15554 7.71222 8.46585 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.009133 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.252464 B = 3065.215885 C = 3796.236872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.415 5.415 4 C 0.020 3.980 5 C -0.209 4.209 6 C -0.194 4.194 7 C -0.061 4.061 8 C 0.514 3.486 9 O -0.611 6.611 10 N -0.431 5.431 11 C -0.358 4.358 12 H 0.052 0.948 13 C 0.021 3.979 14 N -0.869 5.869 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.254 1.254 18 H -0.208 1.208 19 C 0.077 3.923 20 C 0.467 3.533 21 O -0.535 6.535 22 O -0.501 6.501 23 H 0.087 0.913 24 H 0.025 0.975 25 H 0.078 0.922 26 H 0.133 0.867 27 H 0.065 0.935 28 H 0.213 0.787 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.287 0.713 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 5.291 -18.111 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.088 5.088 4 C -0.115 4.115 5 C -0.232 4.232 6 C -0.220 4.220 7 C -0.175 4.175 8 C 0.308 3.692 9 O -0.498 6.498 10 N -0.149 5.149 11 C -0.484 4.484 12 H 0.070 0.930 13 C -0.185 4.185 14 N -0.503 5.503 15 Si 0.729 3.271 16 H -0.200 1.200 17 H -0.178 1.178 18 H -0.131 1.131 19 C -0.048 4.048 20 C 0.309 3.691 21 O -0.424 6.424 22 O -0.315 6.315 23 H 0.106 0.894 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.151 0.849 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.191 0.809 30 H 0.168 0.832 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.061 4.135 -17.595 18.105 hybrid contribution 0.230 0.087 1.156 1.181 sum 1.291 4.221 -16.439 17.021 Atomic orbital electron populations 1.21992 0.93916 1.03451 1.01812 1.22073 0.96308 0.79202 1.04784 1.44289 1.45568 1.11710 1.07273 1.22765 1.02233 0.93415 0.93056 1.21156 1.09321 0.98227 0.94494 1.22270 1.05303 0.96368 0.98103 1.20071 1.14615 0.93737 0.89044 1.17346 0.82615 0.85155 0.84123 1.90593 1.57091 1.20758 1.81386 1.42905 1.57703 1.04580 1.09737 1.18526 1.44802 0.97943 0.87125 0.92973 1.26039 0.97646 0.99703 0.95151 1.70091 1.37007 1.34957 1.08200 0.86724 0.79902 0.78249 0.82219 1.19956 1.17762 1.13119 1.22786 0.89155 0.86290 1.06528 1.24042 0.92582 0.79421 0.73077 1.90734 1.61508 1.47777 1.42383 1.84482 1.33245 1.36428 1.77340 0.89382 0.95523 0.90304 0.84878 0.91638 0.76998 0.80931 0.83209 0.90322 0.82934 0.86362 0.71101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 10.06 71.98 0.72 -3.57 16 2 C 0.10 2.79 6.10 86.38 0.53 3.31 16 3 N -0.41 -13.57 2.78 -510.97 -1.42 -14.99 16 4 C 0.02 0.47 11.35 83.48 0.95 1.42 16 5 C -0.21 -5.38 10.81 22.01 0.24 -5.14 16 6 C -0.19 -6.70 8.11 22.59 0.18 -6.52 16 7 C -0.06 -2.51 6.65 40.34 0.27 -2.25 16 8 C 0.51 27.01 7.28 86.41 0.63 27.64 16 9 O -0.61 -35.89 13.94 -4.46 -0.06 -35.95 16 10 N -0.43 -22.78 1.95 -644.26 -1.26 -24.03 16 11 C -0.36 -21.85 9.53 84.09 0.80 -21.04 16 12 H 0.05 3.74 7.58 -2.91 -0.02 3.72 16 13 C 0.02 1.18 5.10 84.95 0.43 1.61 16 14 N -0.87 -50.93 13.96 21.68 0.30 -50.63 16 15 Si 0.91 38.23 26.27 68.60 1.80 40.03 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 18 H -0.21 -7.44 5.15 99.48 0.51 -6.92 16 19 C 0.08 3.24 3.72 85.63 0.32 3.56 16 20 C 0.47 18.71 5.71 71.24 0.41 19.12 16 21 O -0.54 -26.69 17.15 21.97 0.38 -26.31 16 22 O -0.50 -13.71 12.93 -51.41 -0.66 -14.38 16 23 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.03 0.98 7.31 -2.38 -0.02 0.96 16 25 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.13 2.43 8.09 -2.39 -0.02 2.41 16 27 H 0.07 2.39 6.91 -2.39 -0.02 2.37 16 28 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.15 4.99 2.74 -2.91 -0.01 4.99 16 31 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.15 5.41 5.13 -2.39 -0.01 5.39 16 33 H 0.12 4.83 2.82 -2.39 -0.01 4.82 16 34 H 0.43 7.63 9.10 -74.06 -0.67 6.96 16 Total: -1.00 -84.36 283.16 4.85 -79.51 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.29 Total: 28.62 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.48 Total: 18.14 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.38 Total: -89.66 kcal Atomic # 8 Polarization: -76.29 SS G_CDS: -0.35 Total: -76.64 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.80 Total: 40.03 kcal Total: -84.36 4.85 -79.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605927081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -84.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds