Wall clock time and date at job start Mon Mar 30 2020 00:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.09006 * 109.46971 * 174.08907 * 3 2 1 5 5 C 1.50703 * 109.47156 * 54.08819 * 3 2 1 6 6 H 1.07994 * 119.99657 * 240.00012 * 5 3 2 7 7 C 1.37875 * 119.99759 * 60.00276 * 5 3 2 8 8 N 1.31519 * 120.00372 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47315 * 60.00083 * 9 7 5 11 11 H 1.48504 * 109.47432 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47307 * 300.00034 * 9 7 5 13 13 N 1.46901 * 109.47224 * 294.08705 * 3 2 1 14 14 C 1.46895 * 111.00009 * 275.76313 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.22111 * 14 13 3 16 16 N 1.28333 * 124.90463 * 89.69449 * 15 14 13 17 17 C 1.33489 * 117.83966 * 179.85355 * 16 15 14 18 18 C 1.33865 * 113.17944 * 0.39943 * 17 16 15 19 19 S 1.70753 * 124.90364 * 269.99689 * 15 14 13 20 20 C 1.51710 * 110.89320 * 179.81941 * 18 17 16 21 21 C 1.54303 * 104.80846 * 17.23148 * 20 18 17 22 22 C 1.52615 * 137.15649 * 180.02562 * 17 16 15 23 23 H 1.08999 * 109.47550 * 58.56477 * 1 2 3 24 24 H 1.09003 * 109.47559 * 298.55714 * 1 2 3 25 25 H 1.09003 * 109.47238 * 178.56057 * 1 2 3 26 26 H 1.08998 * 109.47248 * 119.99625 * 2 1 3 27 27 H 1.08996 * 109.47424 * 239.99803 * 2 1 3 28 28 H 0.96994 * 119.99718 * 180.02562 * 8 7 5 29 29 H 1.00909 * 110.99778 * 39.70967 * 13 3 2 30 30 H 1.09002 * 109.47243 * 296.21883 * 14 13 3 31 31 H 1.09001 * 109.47481 * 56.21852 * 14 13 3 32 32 H 1.09003 * 110.37536 * 136.06523 * 20 18 17 33 33 H 1.09003 * 110.37167 * 258.28405 * 20 18 17 34 34 H 1.08998 * 110.97120 * 91.91726 * 21 20 18 35 35 H 1.08997 * 110.97434 * 215.65213 * 21 20 18 36 36 H 1.09002 * 110.31417 * 44.05227 * 22 17 16 37 37 H 1.08997 * 110.32287 * 281.86117 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4216 2.1939 1.1508 6 1 0.8147 3.0670 0.9617 7 6 1.6308 1.7667 2.4449 8 7 2.3695 0.7032 2.6750 9 14 0.8650 2.6985 3.8713 10 1 -0.6130 2.6965 3.7273 11 1 1.2382 2.0410 5.1494 12 1 1.3605 4.0984 3.8711 13 7 1.6702 2.0926 -1.2644 14 6 2.6512 1.7942 -2.3163 15 6 2.1917 2.3991 -3.6179 16 7 2.4799 3.5834 -4.0195 17 6 1.9986 3.9752 -5.2014 18 6 1.2547 3.0394 -5.8038 19 16 1.2064 1.6102 -4.7679 20 6 0.7317 3.5396 -7.1372 21 6 1.6165 4.7575 -7.4761 22 6 2.0566 5.2257 -6.0743 23 1 -0.3634 0.5359 -0.8768 24 1 -0.3634 0.4913 0.9026 25 1 -0.3634 -1.0274 -0.0258 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.5163 0.4025 3.5854 29 1 0.7404 1.8244 -1.5505 30 1 3.6182 2.2154 -2.0413 31 1 2.7445 0.7142 -2.4304 32 1 0.8389 2.7686 -7.9003 33 1 -0.3121 3.8402 -7.0467 34 1 2.4766 4.4599 -8.0760 35 1 1.0388 5.5306 -7.9826 36 1 3.0735 5.6169 -6.1079 37 1 1.3709 5.9837 -5.6959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135039912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:07 Heat of formation + Delta-G solvation = 43.277801 kcal Electronic energy + Delta-G solvation = -17705.959426 eV Core-core repulsion = 14995.770851 eV Total energy + Delta-G solvation = -2710.188575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16653 -36.99331 -35.81551 -32.70628 -30.85931 -28.59628 -28.41901 -26.60539 -24.95079 -23.26372 -22.34998 -21.04574 -19.35861 -18.74844 -17.86196 -16.19086 -15.98249 -14.93254 -14.80549 -14.19857 -13.97110 -13.73991 -13.40137 -13.07216 -12.93501 -12.71048 -12.36250 -12.25543 -11.79105 -11.62177 -11.40052 -11.16103 -11.03809 -10.89600 -10.74304 -10.54422 -10.02332 -9.89059 -9.59552 -9.24063 -9.06660 -8.99648 -8.43296 -8.34154 -7.30480 -5.97444 -3.98764 0.90525 1.37456 1.97234 2.93912 3.35994 3.39950 3.43997 3.84402 4.40891 4.45630 4.66015 4.75793 5.13621 5.29537 5.34530 5.40550 5.46781 5.50297 5.59538 5.68020 5.73930 5.92783 5.96813 6.14630 6.30587 6.33757 6.36661 6.54227 6.85892 7.20478 7.23071 7.47944 7.65812 7.87150 7.99644 8.23394 8.44430 8.56575 9.06059 9.64592 11.09789 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033439 B = 0.004271 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.148228 B = 6553.797830 C = 6950.665237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.132 3.868 15 C 0.087 3.913 16 N -0.455 5.455 17 C 0.047 3.953 18 C -0.265 4.265 19 S 0.118 5.882 20 C -0.035 4.035 21 C -0.115 4.115 22 C -0.040 4.040 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.023 0.977 26 H 0.095 0.905 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 2.600 -18.737 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.305 5.305 14 C -0.001 4.001 15 C -0.194 4.194 16 N -0.169 5.169 17 C -0.084 4.084 18 C -0.386 4.386 19 S 0.375 5.625 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.080 4.080 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.096 2.392 -18.074 18.352 hybrid contribution -0.460 0.221 0.426 0.665 sum -2.556 2.614 -17.648 18.023 Atomic orbital electron populations 1.21571 0.97582 0.98094 1.01320 1.22133 0.95154 1.00980 1.00377 1.19266 0.96449 0.88674 0.84734 0.94480 1.20980 1.30625 1.11561 0.89589 0.92017 1.24890 0.95534 0.95173 0.98652 1.69867 1.39173 1.24082 1.20485 0.86606 0.79584 0.80072 0.81412 1.20392 1.21487 1.20299 1.60938 1.03387 1.63436 1.02759 1.20596 0.98607 0.96163 0.84737 1.27089 0.99129 0.92097 1.01035 1.65384 1.23991 1.14249 1.13233 1.21672 0.97791 0.98052 0.90851 1.26931 1.08874 0.98014 1.04758 1.83743 1.49850 1.16045 1.12887 1.20595 0.99391 0.96959 0.90506 1.22344 0.99723 0.97193 0.96187 1.20829 1.02962 0.92631 0.91557 0.95282 0.91402 0.95756 0.88663 0.97032 0.93022 0.85428 0.88499 0.93743 0.90736 0.90028 0.90510 0.89693 0.90119 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.15 0.35 -2.36 16 2 C -0.15 -3.37 5.50 -26.73 -0.15 -3.51 16 3 C 0.22 5.30 2.33 -68.86 -0.16 5.14 16 4 H 0.04 1.00 7.86 -51.93 -0.41 0.59 16 5 C -0.49 -13.24 7.35 -34.44 -0.25 -13.50 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.58 5.22 -17.82 -0.09 1.49 16 8 N -0.90 -25.07 11.39 55.43 0.63 -24.44 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.67 -14.56 6.24 -109.22 -0.68 -15.24 16 14 C 0.13 2.47 6.06 -4.98 -0.03 2.44 16 15 C 0.09 1.53 6.84 -13.74 -0.09 1.43 16 16 N -0.46 -8.35 10.54 -7.23 -0.08 -8.42 16 17 C 0.05 0.72 7.70 -82.45 -0.63 0.08 16 18 C -0.26 -3.60 7.42 -35.35 -0.26 -3.86 16 19 S 0.12 1.70 23.18 -107.50 -2.49 -0.79 16 20 C -0.03 -0.32 6.80 -26.70 -0.18 -0.51 16 21 C -0.12 -0.90 7.12 -25.42 -0.18 -1.08 16 22 C -0.04 -0.43 6.81 -26.30 -0.18 -0.61 16 23 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 24 H 0.07 1.58 7.05 -51.93 -0.37 1.21 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 2.45 6.25 -51.93 -0.32 2.12 16 27 H 0.01 0.23 7.24 -51.93 -0.38 -0.14 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.33 6.81 6.55 -39.29 -0.26 6.56 16 30 H 0.10 1.88 8.13 -51.93 -0.42 1.45 16 31 H 0.04 0.78 7.23 -51.93 -0.38 0.40 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -29.50 310.59 -10.19 -39.70 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.37 Total: 2.94 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.87 Total: -14.83 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.13 Total: -48.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.49 Total: -0.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.50 -10.19 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135039912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds