Wall clock time and date at job start Mon Mar 30 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.09006 * 109.46971 * 174.08907 * 3 2 1 5 5 C 1.50703 * 109.47156 * 54.08819 * 3 2 1 6 6 H 1.07994 * 119.99657 * 240.00012 * 5 3 2 7 7 C 1.37875 * 119.99759 * 60.00276 * 5 3 2 8 8 N 1.31519 * 120.00372 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47315 * 60.00083 * 9 7 5 11 11 H 1.48504 * 109.47432 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47307 * 300.00034 * 9 7 5 13 13 N 1.46901 * 109.47224 * 294.08705 * 3 2 1 14 14 C 1.46895 * 111.00009 * 275.76313 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.22111 * 14 13 3 16 16 N 1.28333 * 124.90463 * 89.69449 * 15 14 13 17 17 C 1.33489 * 117.83966 * 179.85355 * 16 15 14 18 18 C 1.33865 * 113.17944 * 0.39943 * 17 16 15 19 19 S 1.70753 * 124.90364 * 269.99689 * 15 14 13 20 20 C 1.51710 * 110.89320 * 179.81941 * 18 17 16 21 21 C 1.54303 * 104.80846 * 17.23148 * 20 18 17 22 22 C 1.52615 * 137.15649 * 180.02562 * 17 16 15 23 23 H 1.08999 * 109.47550 * 58.56477 * 1 2 3 24 24 H 1.09003 * 109.47559 * 298.55714 * 1 2 3 25 25 H 1.09003 * 109.47238 * 178.56057 * 1 2 3 26 26 H 1.08998 * 109.47248 * 119.99625 * 2 1 3 27 27 H 1.08996 * 109.47424 * 239.99803 * 2 1 3 28 28 H 0.96994 * 119.99718 * 180.02562 * 8 7 5 29 29 H 1.00909 * 110.99778 * 39.70967 * 13 3 2 30 30 H 1.09002 * 109.47243 * 296.21883 * 14 13 3 31 31 H 1.09001 * 109.47481 * 56.21852 * 14 13 3 32 32 H 1.09003 * 110.37536 * 136.06523 * 20 18 17 33 33 H 1.09003 * 110.37167 * 258.28405 * 20 18 17 34 34 H 1.08998 * 110.97120 * 91.91726 * 21 20 18 35 35 H 1.08997 * 110.97434 * 215.65213 * 21 20 18 36 36 H 1.09002 * 110.31417 * 44.05227 * 22 17 16 37 37 H 1.08997 * 110.32287 * 281.86117 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4216 2.1939 1.1508 6 1 0.8147 3.0670 0.9617 7 6 1.6308 1.7667 2.4449 8 7 2.3695 0.7032 2.6750 9 14 0.8650 2.6985 3.8713 10 1 -0.6130 2.6965 3.7273 11 1 1.2382 2.0410 5.1494 12 1 1.3605 4.0984 3.8711 13 7 1.6702 2.0926 -1.2644 14 6 2.6512 1.7942 -2.3163 15 6 2.1917 2.3991 -3.6179 16 7 2.4799 3.5834 -4.0195 17 6 1.9986 3.9752 -5.2014 18 6 1.2547 3.0394 -5.8038 19 16 1.2064 1.6102 -4.7679 20 6 0.7317 3.5396 -7.1372 21 6 1.6165 4.7575 -7.4761 22 6 2.0566 5.2257 -6.0743 23 1 -0.3634 0.5359 -0.8768 24 1 -0.3634 0.4913 0.9026 25 1 -0.3634 -1.0274 -0.0258 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.5163 0.4025 3.5854 29 1 0.7404 1.8244 -1.5505 30 1 3.6182 2.2154 -2.0413 31 1 2.7445 0.7142 -2.4304 32 1 0.8389 2.7686 -7.9003 33 1 -0.3121 3.8402 -7.0467 34 1 2.4766 4.4599 -8.0760 35 1 1.0388 5.5306 -7.9826 36 1 3.0735 5.6169 -6.1079 37 1 1.3709 5.9837 -5.6959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135039912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:06 Heat of formation + Delta-G solvation = 24.858949 kcal Electronic energy + Delta-G solvation = -17706.758128 eV Core-core repulsion = 14995.770851 eV Total energy + Delta-G solvation = -2710.987276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25348 -38.60731 -37.00930 -34.56194 -32.65113 -29.88473 -29.35496 -28.20061 -26.52107 -25.12196 -23.56609 -21.91597 -21.23712 -19.94559 -18.97633 -18.11732 -16.93641 -16.81915 -16.35950 -15.76606 -15.12866 -15.03130 -14.68976 -14.53944 -14.28454 -14.09684 -13.77670 -13.64908 -13.29568 -12.91074 -12.78106 -12.58015 -12.46121 -12.14516 -12.08921 -11.93493 -11.84481 -11.72563 -11.44454 -11.03804 -10.47245 -10.43381 -10.18907 -9.54430 -9.03560 -8.06443 -6.14624 -0.26781 0.24957 0.80014 1.43730 1.44833 1.52287 1.74915 2.45561 2.77634 3.22573 3.58472 3.63906 3.79203 4.11230 4.16295 4.27259 4.51779 4.53115 4.58214 4.62017 4.68962 4.74666 4.77403 4.89651 4.97575 5.08700 5.12773 5.29162 5.30390 5.31789 5.39729 5.68084 5.73432 5.79153 6.27705 6.59114 6.70096 6.82168 6.94457 7.52400 8.98929 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033439 B = 0.004271 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.148228 B = 6553.797830 C = 6950.665237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.503 4.503 6 H 0.048 0.952 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.139 3.861 15 C 0.050 3.950 16 N -0.489 5.489 17 C 0.010 3.990 18 C -0.255 4.255 19 S 0.153 5.847 20 C -0.036 4.036 21 C -0.102 4.102 22 C -0.042 4.042 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 2.946 -21.090 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.542 4.542 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.313 5.313 14 C 0.006 3.994 15 C -0.229 4.229 16 N -0.204 5.204 17 C -0.120 4.120 18 C -0.376 4.376 19 S 0.410 5.590 20 C -0.076 4.076 21 C -0.141 4.141 22 C -0.082 4.082 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.612 2.737 -20.436 20.932 hybrid contribution 0.021 0.135 1.045 1.053 sum -3.592 2.872 -19.391 19.929 Atomic orbital electron populations 1.21459 0.95958 0.99534 1.00758 1.21963 0.96526 0.99518 0.99861 1.19012 0.94202 0.89772 0.85635 0.97820 1.21177 1.30665 1.11437 0.90925 0.93356 1.25539 0.95915 0.95894 1.00757 1.69988 1.39932 1.25036 1.20836 0.85721 0.79075 0.78690 0.78775 1.19653 1.20941 1.20441 1.60746 1.04262 1.63516 1.02767 1.20401 0.97085 0.96877 0.85000 1.26679 1.01632 0.92988 1.01596 1.65342 1.24878 1.15006 1.15155 1.22392 0.98687 1.00430 0.90493 1.27667 1.07200 0.96755 1.05945 1.83470 1.48064 1.15803 1.11703 1.20873 1.00341 0.98001 0.88390 1.22392 1.00128 0.97143 0.94418 1.21050 1.03441 0.91177 0.92521 0.93646 0.93957 0.93389 0.91537 0.95048 0.93059 0.84858 0.90339 0.92547 0.88738 0.88416 0.89538 0.86591 0.90011 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.39 71.98 0.68 -4.29 16 2 C -0.14 -6.42 5.50 30.59 0.17 -6.25 16 3 C 0.22 11.22 2.33 44.17 0.10 11.32 16 4 H 0.00 0.22 7.86 -2.38 -0.02 0.20 16 5 C -0.50 -27.94 7.35 25.60 0.19 -27.75 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.02 0.97 5.22 84.65 0.44 1.41 16 8 N -0.92 -52.37 11.39 21.45 0.24 -52.13 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.68 -30.10 6.24 -499.45 -3.12 -33.22 16 14 C 0.14 5.36 6.06 85.56 0.52 5.88 16 15 C 0.05 1.78 6.84 88.62 0.61 2.39 16 16 N -0.49 -18.14 10.54 -176.80 -1.86 -20.01 16 17 C 0.01 0.29 7.70 41.93 0.32 0.62 16 18 C -0.25 -6.35 7.42 25.01 0.19 -6.17 16 19 S 0.15 4.20 23.18 -56.49 -1.31 2.89 16 20 C -0.04 -0.54 6.80 30.61 0.21 -0.33 16 21 C -0.10 -1.18 7.12 31.44 0.22 -0.96 16 22 C -0.04 -0.82 6.81 30.87 0.21 -0.61 16 23 H 0.04 1.70 6.42 -2.39 -0.02 1.69 16 24 H 0.04 1.95 7.05 -2.39 -0.02 1.94 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 3.48 6.25 -2.39 -0.01 3.46 16 27 H 0.03 1.29 7.24 -2.39 -0.02 1.27 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.33 13.87 6.55 -89.69 -0.59 13.29 16 30 H 0.08 3.24 8.13 -2.39 -0.02 3.22 16 31 H 0.06 2.00 7.23 -2.39 -0.02 1.98 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.32 310.59 0.32 -65.01 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.48 Total: 15.80 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 3.85 Total: -24.73 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.74 Total: -105.36 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.89 kcal Total: -65.32 0.32 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135039912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.865 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds