Wall clock time and date at job start Mon Mar 30 2020 01:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.50698 * 109.47432 * 239.99944 * 2 1 3 5 5 H 1.08003 * 119.99850 * 239.99733 * 4 2 1 6 6 C 1.37873 * 120.00104 * 59.99975 * 4 2 1 7 7 N 1.31516 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00065 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47295 * 89.99526 * 8 6 4 10 10 H 1.48499 * 109.47396 * 209.99849 * 8 6 4 11 11 H 1.48505 * 109.47095 * 329.99756 * 8 6 4 12 12 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 13 13 C 1.34779 * 120.00169 * 275.00181 * 12 2 1 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 13 18 18 C 1.38243 * 120.40455 * 269.72708 * 17 16 15 19 19 N 1.31845 * 120.81630 * 179.68615 * 18 17 16 20 20 C 1.31872 * 121.75387 * 0.61618 * 19 18 17 21 21 C 1.38419 * 120.72563 * 359.67279 * 20 19 18 22 22 F 1.35104 * 120.44652 * 179.97438 * 21 20 19 23 23 C 1.38593 * 120.40756 * 89.99969 * 17 16 15 24 24 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 25 25 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 27 27 H 0.96999 * 120.00152 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99986 * 95.00778 * 12 2 1 29 29 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 30 30 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 31 31 H 1.08993 * 109.46955 * 300.00219 * 16 15 13 32 32 H 1.09000 * 109.47050 * 60.00048 * 16 15 13 33 33 H 1.07993 * 119.58976 * 359.97438 * 18 17 16 34 34 H 1.07993 * 119.63815 * 179.68232 * 20 19 18 35 35 H 1.08001 * 120.79548 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3216 -1.1204 -4.0078 9 1 1.3431 -2.1618 -4.4117 10 1 2.4868 -0.1415 -5.1122 11 1 3.6296 -1.7583 -3.7120 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5875 16 6 2.7006 0.2548 4.7589 17 6 3.2029 -0.4555 5.9894 18 6 2.3159 -1.0690 6.8542 19 7 2.7469 -1.6979 7.9298 20 6 4.0293 -1.7585 8.2312 21 6 4.9763 -1.1630 7.4160 22 9 6.2886 -1.2281 7.7305 23 6 4.5593 -0.4970 6.2709 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7083 1.1607 -3.4845 28 1 2.2492 -1.6316 1.1527 29 1 3.6493 -1.1200 3.3980 30 1 1.9778 -1.5506 3.8327 31 1 3.3725 1.0774 4.5140 32 1 1.7011 0.6462 4.9483 33 1 1.2572 -1.0365 6.6437 34 1 4.3441 -2.2786 9.1238 35 1 5.2749 -0.0231 5.6152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180140575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:59 Heat of formation + Delta-G solvation = -65.813621 kcal Electronic energy + Delta-G solvation = -19003.163114 eV Core-core repulsion = 15722.030804 eV Total energy + Delta-G solvation = -3281.132310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.24846 -40.44432 -38.92848 -35.15949 -34.42586 -32.42174 -31.88113 -30.33878 -28.69709 -25.37571 -25.14487 -23.97924 -22.14850 -20.77144 -19.40963 -17.67010 -17.56880 -17.21817 -16.96360 -16.07235 -15.72028 -15.27905 -15.05297 -14.34463 -14.18834 -13.72363 -13.69845 -13.36481 -13.15510 -12.70925 -12.47795 -12.28181 -12.05805 -11.65859 -11.14853 -11.07676 -10.93886 -10.74259 -10.35212 -10.26451 -10.02636 -9.88543 -9.24535 -9.07888 -8.96866 -8.58214 -7.94647 -6.15139 -4.24694 0.61435 0.78833 3.22155 3.28995 3.30536 3.31731 3.35147 3.69616 4.00710 4.17227 4.32636 4.44553 4.50649 4.62232 4.91459 5.05141 5.16921 5.17371 5.39759 5.51453 5.57308 5.66830 5.76084 6.06772 6.10266 6.34544 6.79549 6.93500 7.12236 7.42800 7.51548 7.52686 7.66471 7.88457 8.12403 8.63162 8.74781 9.08953 9.43154 10.90794 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.003260 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.716994 B = 8585.860307 C = 8975.667622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.500 3.500 14 O -0.557 6.557 15 C -0.137 4.137 16 C -0.063 4.063 17 C -0.095 4.095 18 C 0.091 3.909 19 N -0.456 5.456 20 C 0.063 3.937 21 C 0.049 3.951 22 F -0.132 7.132 23 C -0.108 4.108 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -5.250 17.289 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.357 5.357 13 C 0.284 3.716 14 O -0.437 6.437 15 C -0.178 4.178 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.066 4.066 19 N -0.163 5.163 20 C -0.095 4.095 21 C 0.028 3.972 22 F -0.110 7.110 23 C -0.135 4.135 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.486 -4.688 17.711 18.863 hybrid contribution 1.336 -0.594 -1.429 2.045 sum 5.822 -5.282 16.282 18.081 Atomic orbital electron populations 1.22078 0.98471 0.99093 1.00913 1.18744 0.91036 0.93984 0.80078 0.93387 1.21225 1.32503 1.13231 0.90378 0.92096 1.24893 0.94814 0.94934 0.99089 1.69900 1.35838 1.22435 1.23912 0.86446 0.79169 0.79282 0.82187 1.20527 1.21048 1.19856 1.46550 1.64916 1.13578 1.10639 1.20377 0.78801 0.87554 0.84827 1.90662 1.51570 1.16160 1.85258 1.21674 1.03192 0.99318 0.93594 1.20337 1.03594 0.97085 0.89143 1.20999 0.92782 0.97913 0.98017 1.22877 1.00876 0.93281 0.89565 1.67747 1.15502 1.15311 1.17735 1.22874 0.88031 0.98837 0.99777 1.18837 0.79168 1.02103 0.97088 1.91528 1.32229 1.94677 1.92597 1.21669 0.96949 0.98744 0.96118 0.89157 0.95493 0.96648 0.92547 0.77899 0.89337 0.89206 0.89466 0.89171 0.81735 0.81792 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.68 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.71 -14.11 5.07 -54.93 -0.28 -14.39 16 13 C 0.50 9.17 7.79 -10.99 -0.09 9.09 16 14 O -0.56 -12.48 15.64 5.56 0.09 -12.39 16 15 C -0.14 -1.69 5.68 -27.88 -0.16 -1.85 16 16 C -0.06 -0.71 4.66 -27.88 -0.13 -0.84 16 17 C -0.10 -0.94 5.15 -104.49 -0.54 -1.48 16 18 C 0.09 0.90 10.86 -17.54 -0.19 0.71 16 19 N -0.46 -4.89 10.36 -13.20 -0.14 -5.03 16 20 C 0.06 0.60 11.17 -17.47 -0.20 0.40 16 21 C 0.05 0.49 7.35 -39.28 -0.29 0.20 16 22 F -0.13 -1.34 17.28 2.25 0.04 -1.30 16 23 C -0.11 -1.05 9.85 -39.21 -0.39 -1.43 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 6.63 8.54 -40.82 -0.35 6.29 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.04 8.05 -51.93 -0.42 0.63 16 32 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.76 309.97 -6.61 -37.37 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.39 Total: 4.42 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.20 Total: -4.69 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.21 Total: -43.47 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.76 -6.61 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180140575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.445 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds