Wall clock time and date at job start Mon Mar 30 2020 01:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.50698 * 109.47432 * 239.99944 * 2 1 3 5 5 H 1.08003 * 119.99850 * 239.99733 * 4 2 1 6 6 C 1.37873 * 120.00104 * 59.99975 * 4 2 1 7 7 N 1.31516 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00065 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47295 * 89.99526 * 8 6 4 10 10 H 1.48499 * 109.47396 * 209.99849 * 8 6 4 11 11 H 1.48505 * 109.47095 * 329.99756 * 8 6 4 12 12 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 13 13 C 1.34779 * 120.00169 * 275.00181 * 12 2 1 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 13 18 18 C 1.38243 * 120.40455 * 269.72708 * 17 16 15 19 19 N 1.31845 * 120.81630 * 179.68615 * 18 17 16 20 20 C 1.31872 * 121.75387 * 0.61618 * 19 18 17 21 21 C 1.38419 * 120.72563 * 359.67279 * 20 19 18 22 22 F 1.35104 * 120.44652 * 179.97438 * 21 20 19 23 23 C 1.38593 * 120.40756 * 89.99969 * 17 16 15 24 24 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 25 25 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 27 27 H 0.96999 * 120.00152 * 180.02562 * 7 6 4 28 28 H 0.96996 * 119.99986 * 95.00778 * 12 2 1 29 29 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 30 30 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 31 31 H 1.08993 * 109.46955 * 300.00219 * 16 15 13 32 32 H 1.09000 * 109.47050 * 60.00048 * 16 15 13 33 33 H 1.07993 * 119.58976 * 359.97438 * 18 17 16 34 34 H 1.07993 * 119.63815 * 179.68232 * 20 19 18 35 35 H 1.08001 * 120.79548 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3216 -1.1204 -4.0078 9 1 1.3431 -2.1618 -4.4117 10 1 2.4868 -0.1415 -5.1122 11 1 3.6296 -1.7583 -3.7120 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5875 16 6 2.7006 0.2548 4.7589 17 6 3.2029 -0.4555 5.9894 18 6 2.3159 -1.0690 6.8542 19 7 2.7469 -1.6979 7.9298 20 6 4.0293 -1.7585 8.2312 21 6 4.9763 -1.1630 7.4160 22 9 6.2886 -1.2281 7.7305 23 6 4.5593 -0.4970 6.2709 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7083 1.1607 -3.4845 28 1 2.2492 -1.6316 1.1527 29 1 3.6493 -1.1200 3.3980 30 1 1.9778 -1.5506 3.8327 31 1 3.3725 1.0774 4.5140 32 1 1.7011 0.6462 4.9483 33 1 1.2572 -1.0365 6.6437 34 1 4.3441 -2.2786 9.1238 35 1 5.2749 -0.0231 5.6152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180140575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:59 Heat of formation + Delta-G solvation = -85.607087 kcal Electronic energy + Delta-G solvation = -19004.021423 eV Core-core repulsion = 15722.030804 eV Total energy + Delta-G solvation = -3281.990619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.00146 -41.24643 -40.43002 -36.81308 -35.54669 -34.29215 -32.70557 -31.53944 -30.23779 -27.34007 -26.25209 -24.73467 -23.33943 -22.23320 -21.03122 -18.91267 -18.39409 -18.29467 -17.81615 -17.32165 -17.12734 -16.81753 -16.33317 -15.96801 -15.04041 -14.93137 -14.60319 -14.39529 -14.31836 -14.14855 -13.91548 -13.62906 -13.20193 -13.00058 -12.94554 -12.80346 -12.66454 -12.27635 -12.13900 -11.99018 -11.08849 -10.87950 -10.67592 -10.62927 -10.52301 -9.88086 -9.70516 -8.17251 -6.34747 -0.12314 0.04146 1.45291 1.45843 1.56314 1.88596 2.35986 2.53449 2.72234 2.99168 3.13228 3.44184 3.63933 3.75346 3.88077 3.99010 4.09805 4.23707 4.44993 4.65386 4.71519 4.79159 4.82284 4.91211 4.94612 5.11811 5.19412 5.23126 5.45877 5.61028 5.63612 5.72048 5.92792 6.12162 6.74233 6.78450 7.01539 7.33743 7.61608 8.88889 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035628 B = 0.003260 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.716994 B = 8585.860307 C = 8975.667622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.708 5.708 13 C 0.495 3.505 14 O -0.602 6.602 15 C -0.122 4.122 16 C -0.056 4.056 17 C -0.095 4.095 18 C 0.091 3.909 19 N -0.474 5.474 20 C 0.066 3.934 21 C 0.041 3.959 22 F -0.135 7.135 23 C -0.108 4.108 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -7.258 18.022 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.357 5.357 13 C 0.283 3.717 14 O -0.484 6.484 15 C -0.161 4.161 16 C -0.094 4.094 17 C -0.097 4.097 18 C -0.066 4.066 19 N -0.182 5.182 20 C -0.092 4.092 21 C 0.020 3.980 22 F -0.114 7.114 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.198 0.802 34 H 0.203 0.797 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.330 -6.735 18.475 20.374 hybrid contribution 1.087 0.073 -1.587 1.925 sum 6.417 -6.662 16.889 19.256 Atomic orbital electron populations 1.21897 0.98371 0.99430 0.99579 1.18316 0.91096 0.91913 0.82181 0.98434 1.21578 1.32526 1.13531 0.90916 0.90854 1.25804 0.94924 0.95572 1.02367 1.70054 1.37050 1.23972 1.24573 0.85352 0.78994 0.78024 0.78005 1.19680 1.21327 1.18786 1.46321 1.65210 1.14310 1.09882 1.21422 0.77359 0.87124 0.85785 1.90645 1.53262 1.18492 1.86035 1.21639 1.04632 0.99443 0.90405 1.20196 1.03210 0.96653 0.89359 1.20758 0.92877 0.98432 0.97648 1.23155 1.01706 0.92563 0.89155 1.67818 1.16063 1.16099 1.18211 1.23243 0.87636 0.98157 1.00193 1.18892 0.79139 1.02605 0.97375 1.91521 1.32444 1.94757 1.92643 1.21834 0.97129 0.98297 0.96212 0.91707 0.94106 0.96723 0.92584 0.75953 0.87058 0.86394 0.90554 0.89668 0.80194 0.79663 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.27 13.64 2.56 44.25 0.11 13.75 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -28.49 8.73 25.60 0.22 -28.27 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.32 11.32 21.45 0.24 -52.08 16 8 Si 0.97 41.46 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 N -0.71 -27.68 5.07 -446.09 -2.26 -29.94 16 13 C 0.50 17.84 7.79 87.66 0.68 18.52 16 14 O -0.60 -27.46 15.64 -3.04 -0.05 -27.51 16 15 C -0.12 -2.68 5.68 29.85 0.17 -2.51 16 16 C -0.06 -1.16 4.66 29.85 0.14 -1.02 16 17 C -0.10 -1.68 5.15 -19.78 -0.10 -1.78 16 18 C 0.09 1.59 10.86 84.69 0.92 2.51 16 19 N -0.47 -9.14 10.36 -195.67 -2.03 -11.17 16 20 C 0.07 1.10 11.17 84.73 0.95 2.05 16 21 C 0.04 0.73 7.35 22.47 0.17 0.89 16 22 F -0.13 -2.51 17.28 44.97 0.78 -1.73 16 23 C -0.11 -1.87 9.85 22.51 0.22 -1.65 16 24 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 25 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 26 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.41 13.05 8.54 -92.71 -0.79 12.26 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 32 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 33 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -67.35 309.97 3.62 -63.73 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.32 Total: 17.58 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.60 Total: -2.37 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -4.05 Total: -93.19 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -67.35 3.62 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180140575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.881 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds